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Author SHA1 Message Date
Joe Knapper
fdf33ce4a8 Apply suggestions from code review of branch flash-led-sim 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-02-12 13:48:12 +00:00
Julian Stirling
18477a663d Define flash in illumination base class 2026-02-12 13:40:20 +00:00
Joe Knapper
3423d4ed0e Test calling base Illumination 2026-02-11 16:28:15 +00:00
Joe Knapper
7da3dbbf8f Test illumination 2026-02-11 16:11:39 +00:00
jaknapper
21f42d4698 Remove flash-led from SangaTest 2026-02-11 12:58:46 +00:00
jaknapper
d4dc113a60 Linter fix in statusPane 2026-02-11 12:12:43 +00:00
Joe Knapper
16458db85b Fix simulated imports 2026-02-11 10:26:04 +00:00
Joe Knapper
676d34842a Apply suggestions from code review of branch flash-led-sim 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-02-11 10:19:19 +00:00
Joe Knapper
f05cb396c8 Update FlashLED to new endpoint in webapp 2026-02-10 22:20:22 +00:00
Joe Knapper
4d788a2817 Remove flash from stage baseclass, add to sim config 2026-02-10 22:19:49 +00:00
jaknapper
5682b4d28d Illumination Things for sangaboard and simulator 2026-02-10 18:42:59 +00:00
Joe Knapper
8435f6ae98 Move illumination to new IlluminationThing 2026-02-10 18:06:21 +00:00
Joe Knapper
1de4366df7 Flash LED endpoint in simulator for parity 2026-02-10 15:59:18 +00:00
Julian Stirling
9ab5a461c0 Merge branch 'snake-scan' into 'v3' 
SnakeScan as a scan planner

See merge request openflexure/openflexure-microscope-server!464
 2026-02-09 17:10:12 +00:00
jaknapper
383fc31f22 Add snake-scan to full config 2026-02-09 16:10:29 +00:00
Joe Knapper
eb88e1f1c0 Apply suggestions from code review of branch snake-scan 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-02-09 16:05:49 +00:00
Joe Knapper
1c17b27c05 Apply suggestions from code review of branch snake-scan 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-02-09 16:05:22 +00:00
Joe Knapper
7413aa57f8 Docstring and typehints suggestions from @julianstirling 2026-02-09 15:08:53 +00:00
Joe Knapper
f230eef2dc New scan workflow for snake scans, move next pos into scan baseclass 
Update tests that were testing wrong method, update all to new select_nearby_focus_site
 2026-02-09 13:19:10 +00:00
Joe Knapper
e59d5e82d8 mypy fix for coords list 2026-02-09 13:09:09 +00:00
Joe Knapper
b4957e0420 SnakeScan as a scan planner 2026-02-09 13:09:07 +00:00
Julian Stirling
663a18a38f Merge branch 'scan-workflows' into 'v3' 
Implement ScanWorkflows allowing multiple scanning methods

Closes #641, #566, #371, and #333

See merge request openflexure/openflexure-microscope-server!462
 2026-02-06 15:21:09 +00:00
Julian Stirling
83c111e71f Update picamera coverage zip 2026-02-06 14:19:57 +00:00
Julian Stirling
cf941b1d11 Fix unit tests for scan workflows 2026-02-06 13:50:47 +00:00
Julian Stirling
8f30f08bdf Apply suggestions from code review of branch scan-workflows 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-02-06 13:28:30 +00:00
Julian Stirling
504a47cbf8 Add some property tests for scanning 2026-01-18 23:37:10 +01:00
Julian Stirling
b26dda60a4 More tests and assoicated bugfixes 2026-01-18 23:19:44 +01:00
Julian Stirling
eb93342d9f Add test of logic for selecting worflow. 2026-01-18 14:23:18 +00:00
Julian Stirling
b22fcf4b88 Complete testing of HistoScanWorkflow 2026-01-16 18:16:50 +00:00
Julian Stirling
1bc6b9e0c4 Add a number of extra tests to ScanWorkflows 2026-01-16 17:02:07 +00:00
Julian Stirling
57b20782a0 Further fixes after introducing scan workflow selection 2026-01-16 13:04:23 +00:00
Julian Stirling
23426ae12c Reorder scan workflow title and blurb in scan tab 2026-01-16 12:25:55 +00:00
Julian Stirling
21b779a4a5 Dynamic UI for scan workflows 2026-01-16 12:18:54 +00:00
Julian Stirling
2a3a54b936 Get unit tests passing with Scan Workflows 2026-01-16 09:28:15 +00:00
Julian Stirling
c82523dd5b Start updating unit tests after refactoring into ScanWorkflows 2026-01-16 09:28:15 +00:00
Julian Stirling
11ef1217e0 Docstrings and tweaks of ScanWorflow refactor 2026-01-16 09:28:15 +00:00
Julian Stirling
c938560f00 Docstrings and final tweaks of ScanWorflow refactor 2026-01-15 21:59:53 +00:00
Julian Stirling
665622a802 First working interation of ScanWorkflows. Needs a tidy 2026-01-15 20:59:53 +00:00
Julian Stirling
adab5bae24 Start smart stack parameters in scan workflow 2026-01-15 16:05:02 +00:00
Julian Stirling
54ed78c832 Create aquisition routines for scan workflows, remove background detector from base ScanWorkflow class 2026-01-15 14:53:47 +00:00
Julian Stirling
b6343362b2 Start splitting ScanData into workflow specific data. 2026-01-15 12:59:06 +00:00
Julian Stirling
5ce74cad8a A start to implementing ScanWorkflow 2026-01-15 12:59:06 +00:00
Julian Stirling
5762fc5947 Merge branch 'background-detector-things' into 'v3' 
Background detector things

See merge request openflexure/openflexure-microscope-server!461
 2026-01-14 16:51:49 +00:00
Julian Stirling
53f35e6317 Update picamera coverage zip 2026-01-14 15:18:56 +00:00
Julian Stirling
ca46439269 Rename "active_detector" for background detecor. Improve thing selector coercion 2026-01-14 15:10:13 +00:00
Julian Stirling
e46836ffe1 Test background detector UI specification 2026-01-14 15:10:13 +00:00
Julian Stirling
b494e7dc3c Fix picamera test suite 2026-01-14 10:05:04 +00:00
Julian Stirling
6b97d2da44 Fix unit tests for background detectors as Things 2026-01-14 10:05:04 +00:00
Julian Stirling
3e8874188e Get UI working for background detector things 2026-01-14 10:05:04 +00:00
Julian Stirling
44860bf777 Continue turning background detectors back into Things 2026-01-14 10:05:04 +00:00