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Author SHA1 Message Date
Joe Knapper
f230eef2dc New scan workflow for snake scans, move next pos into scan baseclass 
Update tests that were testing wrong method, update all to new select_nearby_focus_site
 2026-02-09 13:19:10 +00:00
Joe Knapper
e59d5e82d8 mypy fix for coords list 2026-02-09 13:09:09 +00:00
Joe Knapper
b4957e0420 SnakeScan as a scan planner 2026-02-09 13:09:07 +00:00
Julian Stirling
663a18a38f Merge branch 'scan-workflows' into 'v3' 
Implement ScanWorkflows allowing multiple scanning methods

Closes #641, #566, #371, and #333

See merge request openflexure/openflexure-microscope-server!462
 2026-02-06 15:21:09 +00:00
Julian Stirling
83c111e71f Update picamera coverage zip 2026-02-06 14:19:57 +00:00
Julian Stirling
cf941b1d11 Fix unit tests for scan workflows 2026-02-06 13:50:47 +00:00
Julian Stirling
8f30f08bdf Apply suggestions from code review of branch scan-workflows 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-02-06 13:28:30 +00:00
Julian Stirling
504a47cbf8 Add some property tests for scanning 2026-01-18 23:37:10 +01:00
Julian Stirling
b26dda60a4 More tests and assoicated bugfixes 2026-01-18 23:19:44 +01:00
Julian Stirling
eb93342d9f Add test of logic for selecting worflow. 2026-01-18 14:23:18 +00:00
Julian Stirling
b22fcf4b88 Complete testing of HistoScanWorkflow 2026-01-16 18:16:50 +00:00
Julian Stirling
1bc6b9e0c4 Add a number of extra tests to ScanWorkflows 2026-01-16 17:02:07 +00:00
Julian Stirling
57b20782a0 Further fixes after introducing scan workflow selection 2026-01-16 13:04:23 +00:00
Julian Stirling
23426ae12c Reorder scan workflow title and blurb in scan tab 2026-01-16 12:25:55 +00:00
Julian Stirling
21b779a4a5 Dynamic UI for scan workflows 2026-01-16 12:18:54 +00:00
Julian Stirling
2a3a54b936 Get unit tests passing with Scan Workflows 2026-01-16 09:28:15 +00:00
Julian Stirling
c82523dd5b Start updating unit tests after refactoring into ScanWorkflows 2026-01-16 09:28:15 +00:00
Julian Stirling
11ef1217e0 Docstrings and tweaks of ScanWorflow refactor 2026-01-16 09:28:15 +00:00
Julian Stirling
c938560f00 Docstrings and final tweaks of ScanWorflow refactor 2026-01-15 21:59:53 +00:00
Julian Stirling
665622a802 First working interation of ScanWorkflows. Needs a tidy 2026-01-15 20:59:53 +00:00
Julian Stirling
adab5bae24 Start smart stack parameters in scan workflow 2026-01-15 16:05:02 +00:00
Julian Stirling
54ed78c832 Create aquisition routines for scan workflows, remove background detector from base ScanWorkflow class 2026-01-15 14:53:47 +00:00
Julian Stirling
b6343362b2 Start splitting ScanData into workflow specific data. 2026-01-15 12:59:06 +00:00
Julian Stirling
5ce74cad8a A start to implementing ScanWorkflow 2026-01-15 12:59:06 +00:00
Julian Stirling
5762fc5947 Merge branch 'background-detector-things' into 'v3' 
Background detector things

See merge request openflexure/openflexure-microscope-server!461
 2026-01-14 16:51:49 +00:00
Julian Stirling
53f35e6317 Update picamera coverage zip 2026-01-14 15:18:56 +00:00
Julian Stirling
ca46439269 Rename "active_detector" for background detecor. Improve thing selector coercion 2026-01-14 15:10:13 +00:00
Julian Stirling
e46836ffe1 Test background detector UI specification 2026-01-14 15:10:13 +00:00
Julian Stirling
b494e7dc3c Fix picamera test suite 2026-01-14 10:05:04 +00:00
Julian Stirling
6b97d2da44 Fix unit tests for background detectors as Things 2026-01-14 10:05:04 +00:00
Julian Stirling
3e8874188e Get UI working for background detector things 2026-01-14 10:05:04 +00:00
Julian Stirling
44860bf777 Continue turning background detectors back into Things 2026-01-14 10:05:04 +00:00
Julian Stirling
6a1ad573d9 Start turning background detectors back into things 2026-01-14 10:05:04 +00:00
Julian Stirling
dcf5b26c06 Merge branch 'scans_folder_bugfix' into 'v3' 
Bugfix, stop saving scans into log folder

See merge request openflexure/openflexure-microscope-server!460
 2026-01-14 10:03:34 +00:00
Julian Stirling
4b81d52a89 Add tests for _full_config_from_args 2026-01-13 20:32:05 +00:00
Julian Stirling
ad53f72a60 Bugfox, stop saving scans into log folder 2026-01-13 18:03:13 +00:00
Joe Knapper
9df3fd6360 Merge branch 'fast-sim' into 'v3' 
Simulation Camera Improvements

Closes #638

See merge request openflexure/openflexure-microscope-server!458
 2026-01-13 14:15:35 +00:00
Julian Stirling
0bba613a4b Apply suggestions from code review of branch fast-sim 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-01-13 11:45:32 +00:00
Julian Stirling
51d6bdb991 Fully generate simulation sample canvas before setting to class attribute 2026-01-13 11:34:49 +00:00
Julian Stirling
6f74e447cd Merge branch 'Windows-Testing' into 'v3' 
Fix (most) unit tests on Windows

See merge request openflexure/openflexure-microscope-server!457
 2026-01-12 22:15:51 +00:00
Julian Stirling
795d145ae6 Merge branch 'proper-integration-tests' into 'v3' 
Proper integration tests

Closes #480

See merge request openflexure/openflexure-microscope-server!456
 2026-01-12 21:50:38 +00:00
Julian Stirling
a15458c02d Apply suggestions from code review of branch Windows-Testing 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2026-01-12 21:40:58 +00:00
Julian Stirling
4c557612fb Apply suggestions from code review of branch fast-sim 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-01-12 17:41:51 +00:00
Julian Stirling
ad8dd55cca Update integration test for new labthings client exceptions 2026-01-12 16:23:10 +00:00
Julian Stirling
6ec60523cd Ensure that each integration test tests more than just a lack of errors 2026-01-12 16:23:10 +00:00
Julian Stirling
7e9637e496 Run new integration suite in CI 2026-01-12 16:23:10 +00:00
Julian Stirling
8b51a66ae4 Move test_dummy_server out of unit tests and into integration tests. 2026-01-12 16:23:10 +00:00
Julian Stirling
c9ac85bffc Rename the test that fully boots the server to lifecycle_test 2026-01-12 16:23:09 +00:00
Julian Stirling
d6b00ef1bb Change out of temp dirs in git version tests before closing so windows doesn't error 2026-01-12 16:20:22 +00:00
Julian Stirling
3e8511f281 Use Python not echo as a mock shutdown command for windows compatibility 2026-01-12 16:20:22 +00:00