jaknapper
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a9d06f7d7e
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Remove commented out code, unused arguments and extra logging
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2025-05-07 20:22:39 +01:00 |
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jaknapper
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a88349dbfe
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Loop through all stitched images
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2025-05-07 20:22:39 +01:00 |
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jaknapper
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aa656e4a01
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Split out zip functions and copying stitched image
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2025-05-07 20:22:38 +01:00 |
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jaknapper
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666dced86d
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Update the GUI download links to point to new download_zip function
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2025-05-07 20:21:03 +01:00 |
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Joe Knapper
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2c8ac1dffc
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Merge branch 'stacking_Thing' into 'v3'
z stacking Thing
See merge request openflexure/openflexure-microscope-server!246
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2025-05-07 19:15:59 +00:00 |
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jaknapper
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2205459aeb
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Removed z_stack Thing from rebase
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2025-05-07 19:59:33 +01:00 |
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jaknapper
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673a135157
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Reorganise imports
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2025-05-07 19:52:21 +01:00 |
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jaknapper
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a4801ad861
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Update camera thing to match upstream
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2025-05-07 19:52:21 +01:00 |
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jaknapper
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6cf99d5096
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Stack settings in GUI
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2025-05-07 19:52:21 +01:00 |
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jaknapper
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f50580cdd0
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Give sharpness monitor a descriptive name, not m
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2025-05-07 19:52:20 +01:00 |
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jaknapper
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bf6437b42c
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Renaming z_stack features for clarity, docstring on AutofocusThing
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2025-05-07 19:52:20 +01:00 |
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jaknapper
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9f39f61d03
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Stacking in autofocus with temp capture Thing
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2025-05-07 19:52:18 +01:00 |
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jaknapper
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dee11deec1
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New capturing Thing
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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9b2ccea660
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Don't move further after the final image of the stack
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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ade713b6d0
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Create a stack folder and copy the middle image to image_dir
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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0b7a817674
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Ruff formatting and removing all capturing from smart_scan
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2025-05-07 19:51:55 +01:00 |
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jaknapper
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1f3211e3ee
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Functional z stack Thing
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2025-05-07 19:49:52 +01:00 |
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Joe Knapper
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327a87e344
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Merge branch 'no-tour' into 'v3'
Disable tour
See merge request openflexure/openflexure-microscope-server!238
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2025-05-07 14:02:09 +00:00 |
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Joe Knapper
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fe5db1a0f5
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Merge branch 'image_count' into 'v3'
Regex to count captured images
Closes #306
See merge request openflexure/openflexure-microscope-server!253
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2025-05-07 13:53:37 +00:00 |
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Joe Knapper
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88f72caed5
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Merge branch 'thumbnails-in-scan-tab' into 'v3'
Thumbnails and accurate durations in scan-list tab
See merge request openflexure/openflexure-microscope-server!250
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2025-05-07 13:53:34 +00:00 |
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jaknapper
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f5265b262e
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Regex as global
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2025-05-07 11:26:49 +01:00 |
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jaknapper
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30ff796833
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Regex to count captured images
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2025-05-07 11:09:29 +01:00 |
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Joe Knapper
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cbc81c8930
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Merge branch 'common-stitching-args' into 'v3'
Remove correlation only stitching, now covered by preview stitch
See merge request openflexure/openflexure-microscope-server!244
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2025-05-01 15:49:07 +00:00 |
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Joe Knapper
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a1be3e518f
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Apply 2 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-01 14:14:34 +00:00 |
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jaknapper
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fbbb3decdc
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Ruff formatting
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2025-05-01 13:16:48 +00:00 |
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jaknapper
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b8ddab1ed8
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Remove correlation only stitching, now covered by preview stitch
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2025-05-01 13:16:48 +00:00 |
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jaknapper
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5bfadceeeb
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Pink icon for thumbnail placeholders
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2025-04-23 16:13:47 +01:00 |
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jaknapper
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5ca4c824aa
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Remove producing thumbnail (to be added to stitching repo)
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2025-04-23 14:28:41 +01:00 |
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jaknapper
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7617d31194
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Errors raised as errors, not logs
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2025-04-23 14:28:05 +01:00 |
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Julian Stirling
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3adc34c30b
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Merge branch 'dont-test-focus-change' into 'v3'
Remove focus_change_acceptable test
Closes #342
See merge request openflexure/openflexure-microscope-server!249
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2025-04-23 11:28:05 +00:00 |
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Joe Knapper
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c4dc357cf3
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-04-23 10:57:56 +00:00 |
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Joe Knapper
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283a10c560
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Always move back to expected focus after failed autofocus
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2025-04-23 09:15:54 +00:00 |
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Julian Stirling
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0ac455bf89
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Merge branch 'autofocus-at-start' into 'v3'
Looping autofocus at the start of the scan
See merge request openflexure/openflexure-microscope-server!247
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2025-04-23 08:10:21 +00:00 |
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jaknapper
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91057f164a
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Thumbnails and accurate durations in scan-list tab
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2025-04-22 19:02:29 +01:00 |
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jaknapper
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3bcc71304e
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Fixed focused path tracking, move to estimated focus before autofocus
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2025-04-22 14:33:27 +01:00 |
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jaknapper
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7cb1a3980e
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Remove focus_change_acceptable test, autofocus from centre
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2025-04-17 17:20:40 +01:00 |
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jaknapper
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5d8a1073b2
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Remove focus_change_acceptable
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2025-04-17 17:02:39 +01:00 |
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Julian Stirling
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257d700333
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Merge branch 'shorter-move-spiral-path' into 'v3'
Add a scan path planner that prioritises shorter moves
See merge request openflexure/openflexure-microscope-server!245
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2025-04-17 15:37:52 +00:00 |
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Joe Knapper
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07cbef0536
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Reimplement tie breaking by distance between
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2025-04-17 10:25:40 +01:00 |
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jaknapper
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c895383a83
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Remove repeated moves_from_centre() code
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2025-04-17 10:12:12 +01:00 |
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jaknapper
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c18472dc8a
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Add the import info for ScanPlanner
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2025-04-17 09:56:23 +01:00 |
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Joe Knapper
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041106ebea
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Only open pickle file if planner was successfully generated
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2025-04-17 08:48:14 +00:00 |
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Joe Knapper
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1248c2b7c8
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Remove unneeded third sort key
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2025-04-17 08:47:24 +00:00 |
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Joe Knapper
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871cab72f4
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Apply 5 suggestion(s) to 2 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-04-17 08:43:51 +00:00 |
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jaknapper
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2741123cf9
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Looping autofocus at the start of the scan
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2025-04-16 18:47:47 +01:00 |
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Joe Knapper
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c18667c973
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Update pickles
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2025-04-15 16:38:11 +01:00 |
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Joe Knapper
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b414697cfb
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Update testing for multiple sample shapes
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2025-04-15 16:35:52 +01:00 |
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jaknapper
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7373424fcf
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Ruff formatting
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2025-04-15 10:40:45 +01:00 |
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jaknapper
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ec25ae7126
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Add a scan path planner that prioritises shorter moves
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2025-04-14 18:49:35 +01:00 |
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Julian Stirling
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be64d4c5e0
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Merge branch 'further-scan-refactor' into 'v3'
Further scan refactor
See merge request openflexure/openflexure-microscope-server!242
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2025-04-14 16:07:37 +00:00 |
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