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1092 commits

Author SHA1 Message Date
Richard Bowman
9c069ef372 Allow MissingStage to be explicitly selected 
You can now set the stage type to "MissingStage" in
microscope_configuration.json to stop the server looking for the stage.
A warning is logged to make it obvious what's happening.
 2021-02-04 20:31:20 +00:00
Joel Collins
5232b36644 Test cobertura mypy coverage report 2021-01-08 10:05:31 +00:00
Joel Collins
ef0f74838a Removed unused import 2021-01-07 10:09:43 +00:00
Joel Collins
e8560a1d5d Removed unused ERROR_SOURCES 2021-01-06 17:31:58 +00:00
Joel Collins
61554af270 Restructured camera rescue 2021-01-06 17:31:45 +00:00
Joel Collins
3501a5b624 Merge branch 'picamera-rescue' into 'master' 
Picamerax error recovery

See merge request openflexure/openflexure-microscope-server!86
 2021-01-05 17:11:03 +00:00
Joel Collins
f877c4f745 Added Spiral scan to standard options 2021-01-05 14:30:49 +00:00
Joel Collins
0592d31b22 Fix #194 2020-12-14 15:00:37 +00:00
Joel Collins
18956bf230 Update README.md 2020-12-09 16:04:23 +00:00
Joel Collins
68380385cb Watch for broken frames using JPEG end bytes, and log error 2020-12-08 18:07:05 +00:00
Joel Collins
d2488c566a Added more Advanced bitrate controls 2020-12-08 17:57:42 +00:00
Joel Collins
0626b13bfd Formatting 2020-12-07 17:08:47 +00:00
Joel Collins
42e0dfd39c Replaced MJPEG quality setting with MJPEG bitrate 2020-12-07 17:05:56 +00:00
Joel Collins
3e2f876627 Added mjpeg bitrate to settings 2020-12-07 16:49:00 +00:00
Joel Collins
9659c45bb4 Fixed SangaDeltaStage type annotations 2020-12-07 12:44:34 +00:00
Joel Collins
c75a7c5401 Lockfile update 2020-12-07 11:13:35 +00:00
Joel Collins
9d04842c56 Handle missing this.$refs.textboxKey ref 2020-12-07 11:12:07 +00:00
Joel Collins
599c31534d globalUpdateCaptures after scan 2020-12-07 10:37:04 +00:00
Joel Collins
58b2967f53 Fixed autofocus 'PiCameraStreamer' object has no attribute 'annotate_text' error 2020-12-07 10:12:30 +00:00
Joel Collins
311366c943 Added type hints to CSM extension 2020-12-04 17:05:40 +00:00
Joel Collins
920354537a Integrated CSMExtension 2020-12-04 16:05:39 +00:00
Joel Collins
7ba3f447e1 Added extra type hints 2020-12-04 15:23:03 +00:00
Joel Collins
1de6b2a0ab Fixed onScanError 2020-12-04 15:14:30 +00:00
Joel Collins
8eff136cc3 Reduced logging level of some mock camera notices 2020-12-04 15:09:45 +00:00
Joel Collins
4d1d0a15c4 Added log level filter 2020-12-04 15:08:47 +00:00
Joel Collins
08f653233b Fixed onError propagation 2020-12-04 15:08:39 +00:00
Joel Collins
213dec3e5c Fixed individual captures creating 'undefined' dataset 2020-12-04 14:24:00 +00:00
Joel Collins
3c3ecd7f0c Updated dependencies 2020-12-04 13:39:49 +00:00
Joel Collins
63b633ba44 2.9 dev numpy types 2020-12-04 13:35:11 +00:00
Kaspar Emanuel
805b9012dd Make linter happy 2020-12-02 10:57:07 +00:00
Kaspar Emanuel
cc73aec257 Detect picamera in use error 2020-12-02 10:46:23 +00:00
Kaspar Emanuel
cc1c5e77c3 Format check_picamera.py with black 2020-12-02 10:46:23 +00:00
Kaspar Emanuel
fbd3b349df Detect camera not enabled picamerax error 2020-12-02 10:46:21 +00:00
Joel Collins
f2a2d880f2 Stricter runtime type checks 2020-12-01 17:30:53 +00:00
Joel Collins
fd42e2e2b6 Fixed broken dataset rendering if key exists but is empty 2020-12-01 17:13:20 +00:00
Joel Collins
ac667c3e2a Fixed types in move_rel method 2020-12-01 17:10:47 +00:00
Joel Collins
bc9b80d11a Added start_worker and get_frame for compatibility 2020-12-01 17:10:25 +00:00
Joel Collins
37f92b6cce Linting fixes 2020-11-30 17:17:14 +00:00
Joel Collins
b8354d3e8e Added type information to LABTHINGS_EXTENSIONS 2020-11-30 17:11:30 +00:00
Joel Collins
e433a897a4 Only use CompositeLock for microscope lock 2020-11-30 17:10:32 +00:00
Joel Collins
bc3927759f Handle missing endpoints 2020-11-30 17:10:00 +00:00
Joel Collins
d28848412c Fixed get_locations method reference 2020-11-30 16:59:56 +00:00
Joel Collins
18a0eedd5e Fixed tile method reference 2020-11-30 16:57:54 +00:00
Joel Collins
8d0759e9e0 Updated default extensions to subclass structure 2020-11-30 16:41:39 +00:00
Joel Collins
7866ec0f47 Static type analysis 2020-11-30 13:36:45 +00:00
Joel Collins
b2192b2190 Fixed unused imports 2020-11-25 15:32:08 +00:00
Joel Collins
f1060d9e6d Merge branch 'master' into 'pytest' 
# Conflicts:
#   poetry.lock
 2020-11-25 15:26:20 +00:00
Joel Collins
5137d1b9dc Added basic unit tests of non-integrated functions 2020-11-25 15:25:17 +00:00
Joel Collins
6819ded7ef Removed unused pynpm package 2020-11-24 17:49:50 +00:00
Joel Collins
4ba4403125 Added custom h4 formatting 2020-11-24 12:28:59 +00:00