Julian Stirling
86fa48fb9b
Update select_nearby_focus_site to use moves between
2026-02-11 11:03:07 +00:00
Julian Stirling
9e477a26d8
Simplify planners a little to consolidate snake and raster
2026-02-11 10:39:30 +00:00
Julian Stirling
0e5f9f46ca
Fix docstring error
2026-02-10 16:37:32 +00:00
jaknapper
f1845c3039
RectangleWorkflow as a baseclass
2026-02-10 14:05:38 +00:00
jaknapper
6294cde471
Fully subclass Rectangle basescanner for raster and snake
2026-02-09 19:35:19 +00:00
Joe Knapper
1a0dd71f30
Intermediate level RectangleScan class for all three scanners
2026-02-09 18:48:49 +00:00
Joe Knapper
0177596fb6
Add raster scan, with generic typing to allow subclassed settings
2026-02-09 18:48:49 +00:00
Joe Knapper
1c17b27c05
Apply suggestions from code review of branch snake-scan
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2026-02-09 16:05:22 +00:00
Joe Knapper
7413aa57f8
Docstring and typehints suggestions from @julianstirling
2026-02-09 15:08:53 +00:00
Joe Knapper
f230eef2dc
New scan workflow for snake scans, move next pos into scan baseclass
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Update tests that were testing wrong method, update all to new select_nearby_focus_site
2026-02-09 13:19:10 +00:00
Joe Knapper
e59d5e82d8
mypy fix for coords list
2026-02-09 13:09:09 +00:00
Joe Knapper
b4957e0420
SnakeScan as a scan planner
2026-02-09 13:09:07 +00:00
Julian Stirling
7bc4c514a6
Autofix import order
2025-12-02 16:26:15 +00:00
Julian Stirling
dfe7fb6c42
Stop scan planner plots erroring if there are no secondary locations
2025-11-28 12:00:35 +00:00
Julian Stirling
90be139575
Update scan planners so secondary locations are imaged first and don't affect later planning
2025-11-28 09:53:24 +00:00
Julian Stirling
ff606ff10d
Apply spelling corrections and variable renaming from code review of branch improve-scan-planning
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-10-20 18:26:20 +01:00
Julian Stirling
dbb0a4ac16
Fix issues found by MyPy
2025-10-19 23:04:24 +01:00
Julian Stirling
f781e6b674
Image intermediate locations between sample and background
2025-10-19 21:29:11 +01:00
Julian Stirling
39a04df5be
Objects for scan locations allowing more sophisitcated tracking.
...
This commit updates the scan planners to allow more sophisticated
tracking of past positions. Currently it still checks that
the algorithm is unchanged from past behaviour.
2025-10-19 19:55:36 +01:00
Julian Stirling
6b1e40f689
Add flake8-simplicity rules
2025-09-18 16:21:45 +01:00
Joe Knapper
9973221ed9
Merge branch 'neighbour-ratio' into 'v3'
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Change neighbour ratio to dx and dy
See merge request openflexure/openflexure-microscope-server!371
2025-09-05 10:56:29 +00:00
jaknapper
980b1e5187
Type hints to inits in scan planners
2025-09-05 11:22:43 +01:00
jaknapper
ce5a22eb64
Added neighbour ratio to spiral scan init
2025-09-05 10:55:21 +01:00
Julian Stirling
2ce49088e7
Add return typehints to magic methods
2025-08-27 18:56:09 +01:00
Julian Stirling
4c46330959
Add ANN20X rules to ruff
2025-08-27 18:56:08 +01:00
Julian Stirling
24233412af
Start adding ANN ruff rules
2025-08-27 18:54:15 +01:00
Julian Stirling
dade26cde1
Tweak a few error types.
2025-08-21 16:11:30 +01:00
jaknapper
85e10189be
Restore behaviour that uses nearest focused pos if adjacent fails
2025-08-19 14:54:38 +01:00
jaknapper
501fe3f9d2
Switch to neighbour cutoff based on dx and dy
2025-08-19 14:07:30 +01:00
jaknapper
422e63ea90
Increase neighbour ratio to 1.6
2025-08-15 18:56:26 +01:00
Julian Stirling
7e6017f648
Get codespell passing and add it as a CI job.
2025-07-11 00:16:25 +01:00
Julian Stirling
80beeea07b
Add punctuation to docstrings
2025-07-10 09:24:50 +01:00
Julian Stirling
4dc41bb008
Single line summaries of docstrings
2025-07-10 09:24:49 +01:00
Julian Stirling
35d47fe3ed
Starting docstring on the same lines as the quotations
2025-07-10 09:24:49 +01:00
Julian Stirling
be6a6ca6fe
No starting docstrings with This
2025-07-10 09:24:49 +01:00
Julian Stirling
f51dae7b3a
Doc strings to imperative mood
2025-07-10 09:24:49 +01:00
Julian Stirling
a84a916719
Restructured text fixes so that pydoctor would return without an error
2025-07-09 23:59:08 +01:00
Julian Stirling
fc6c13f40e
Apply suggestions from code review of branch fast-stack
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-06-27 10:41:53 +00:00
Julian Stirling
e90ff73499
Move smart stack specific scan planning logic to SmartSpiral
2025-06-27 01:08:55 +01:00
Julian Stirling
2aea6a2569
Docstrings and stop using Pydantic for ScanParameters
2025-06-26 19:46:25 +01:00
jaknapper
8ba40832e0
Neighbour cutoff moved from autofocus.py to scan_planners.py
2025-06-23 14:13:08 +01:00
jaknapper
333ea1b644
More input validation and comments
2025-06-23 12:02:00 +01:00
jaknapper
a001da0bcb
Restore closest_focus_site function
2025-06-20 15:01:09 +01:00
jaknapper
00321d761d
Update docstring for nearby focus site
2025-06-19 14:57:27 +01:00
jaknapper
c0677858a1
Scan planner finds lowest neighbour, not most recent
2025-06-18 15:40:21 +01:00
Joe Knapper
07cbef0536
Reimplement tie breaking by distance between
2025-04-17 10:25:40 +01:00
jaknapper
c895383a83
Remove repeated moves_from_centre() code
2025-04-17 10:12:12 +01:00
Joe Knapper
1248c2b7c8
Remove unneeded third sort key
2025-04-17 08:47:24 +00:00
Joe Knapper
b414697cfb
Update testing for multiple sample shapes
2025-04-15 16:35:52 +01:00
jaknapper
7373424fcf
Ruff formatting
2025-04-15 10:40:45 +01:00
