Julian Stirling
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3aa9b9100a
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Add a number of tests for scan directories and fix bugs
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2025-06-27 21:06:16 +01:00 |
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Julian Stirling
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1267d881b9
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Start writing tests for smart scan
Focusing on methods that don't start the whole scan.
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2025-06-27 21:06:16 +01:00 |
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Julian Stirling
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32f78a4cff
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Trying to make a distinction between file directory operations for scans and scanning code
This started as a small change and spiralled out of control it needs good unit tests and testing
before considering to merge
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2025-06-27 21:06:16 +01:00 |
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Julian Stirling
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0d2f324324
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Split creation of scan directory information into class with small testable methods
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2025-06-27 21:06:16 +01:00 |
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Julian Stirling
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3e0264bcbc
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Merge branch 'fast-stack' into 'v3'
A stack that tests whether the sharpest image is towards the middle
See merge request openflexure/openflexure-microscope-server!271
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2025-06-27 20:02:36 +00:00 |
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Julian Stirling
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8002600fcf
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Apply suggestions from code review of branch fast-stack
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-06-27 16:40:18 +00:00 |
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Julian Stirling
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9a92fd478a
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Final docstring and testing updates based on code review
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2025-06-27 16:54:28 +01:00 |
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Julian Stirling
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46f3d21632
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Apply suggestions from code review of branch fast-stack
Co-authored-by: Beth Probert <beth_probert@outlook.com>
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2025-06-27 11:52:53 +01:00 |
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Julian Stirling
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fc6c13f40e
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Apply suggestions from code review of branch fast-stack
Co-authored-by: Beth Probert <beth_probert@outlook.com>
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2025-06-27 10:41:53 +00:00 |
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Julian Stirling
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73e54b802b
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Stop smart stack infinietly looping
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2025-06-27 01:29:26 +01:00 |
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Julian Stirling
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e90ff73499
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Move smart stack specific scan planning logic to SmartSpiral
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2025-06-27 01:08:55 +01:00 |
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Julian Stirling
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2ce2f998fa
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add tests for helper classes defined by fast stack
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2025-06-27 00:34:51 +01:00 |
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Julian Stirling
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05af5e7548
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Write unit teasts for CameraMemoryBuffer and fix minor issues found
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2025-06-26 22:49:09 +01:00 |
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Julian Stirling
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2aea6a2569
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Docstrings and stop using Pydantic for ScanParameters
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2025-06-26 19:46:25 +01:00 |
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Julian Stirling
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43d5f2fdfe
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Change capture_resolution to save resolution, because it is used for saving not capture
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2025-06-26 19:00:52 +01:00 |
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Julian Stirling
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6a87805b47
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Fixing a number of issues from the merge and refactor.
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2025-06-26 18:29:12 +01:00 |
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Julian Stirling
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61dd5e4958
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Compete first (untested) pass of trying to make fast stack compatible with new memory captures
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2025-06-26 17:43:11 +01:00 |
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Julian Stirling
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fda0a6e1ab
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Merge branch 'v3' into fast-stack, with conflict resolution but not fully
working yet
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2025-06-26 11:50:24 +01:00 |
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Joe Knapper
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378998d230
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Merge branch 'jpeg-capture-in-stacking' into 'v3'
2MP from 8MP capturing
Closes #364, #413, #298, #303, #288, #358, and #433
See merge request openflexure/openflexure-microscope-server!251
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2025-06-25 17:57:51 +00:00 |
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Joe Knapper
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b49aecb802
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Apply suggestions from code review of branch jpeg-capture-in-stacking
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2025-06-25 17:32:05 +00:00 |
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Julian Stirling
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761957d7fb
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Clarify exposure variables in docstring
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2025-06-25 17:53:43 +01:00 |
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Julian Stirling
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0389ab760a
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Apply suggestions from code review of branch jpeg-capture-in-stacking
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-06-25 16:52:23 +00:00 |
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Julian Stirling
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ee8c58c99f
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Docstrings, typehints, and clarifications in PiCamera and its utils
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2025-06-25 17:36:11 +01:00 |
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Julian Stirling
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83e0e08ccc
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Apply suggestions from code review of branch jpeg-capture-in-stacking
Co-authored-by: Beth Probert <beth_probert@outlook.com>
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2025-06-25 15:12:28 +00:00 |
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Julian Stirling
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0751457ed3
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Remove rednundant if __main__ from hardware tests
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2025-06-25 16:01:59 +01:00 |
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Julian Stirling
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ce5b5b781c
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Add typehints and docstrings as suggested in review
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2025-06-25 15:55:48 +01:00 |
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Julian Stirling
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0933ece63a
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Apply suggestions from code review of branch jpeg-capture-in-stacking
Co-authored-by: Beth Probert <beth_probert@outlook.com>
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2025-06-25 15:39:36 +01:00 |
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Julian Stirling
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2d49bf2061
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Remove duplicate exposure property from picamera thing
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2025-06-25 10:21:54 +01:00 |
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Julian Stirling
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59d15fb186
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Add further comment to picamera tests
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2025-06-25 10:18:43 +01:00 |
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Julian Stirling
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8a4ad49c03
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Apply suggestions from code review of branch jpeg-capture-in-stacking
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
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2025-06-25 09:17:32 +00:00 |
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Julian Stirling
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4e78f3d104
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Fix exposure time adjusting when setting the same value and add test
Closes #433
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2025-06-24 17:01:16 +01:00 |
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jaknapper
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9966cb0fbb
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Longer wait in exposure time test with fewer loops and lower exposure time
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2025-06-24 15:55:19 +01:00 |
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jaknapper
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83832bf375
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Update import name of recalibrate_utils
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2025-06-24 15:53:57 +01:00 |
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Julian Stirling
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a43a82213d
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Improve docs for hardware specific tests
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2025-06-24 14:07:58 +01:00 |
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Julian Stirling
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16dfe9073f
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Merge branch 'do-not-overwrite-globals' into 'v3'
Remove the overwriting of internal globals, requires removing future annoations
Closes #347
See merge request openflexure/openflexure-microscope-server!303
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2025-06-24 10:55:43 +00:00 |
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Julian Stirling
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be07966631
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Remove the overwriting of internal globals, requires removing future annoations
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2025-06-24 10:18:30 +01:00 |
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jaknapper
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11c8f47e20
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Rename central image to sharpest
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2025-06-23 18:13:46 +01:00 |
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jaknapper
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7c3a9ad01f
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Copy sharpest image from stack, not the most average sharpness!
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2025-06-23 18:08:27 +01:00 |
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Julian Stirling
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febb0d2690
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Clarify white balance code.
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2025-06-23 17:49:35 +01:00 |
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Julian Stirling
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cdae90013a
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Modify comment for clarity in the function that copies the lens shading algorithm
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2025-06-23 16:24:40 +00:00 |
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Julian Stirling
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afea1e3658
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Create function for flattening and rounding array and converting to a list
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2025-06-23 17:22:28 +01:00 |
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Joe Knapper
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7435d15b65
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Merge branch 'Bug-template-typo' into 'v3'
Correct spelling of Sangaboard
See merge request openflexure/openflexure-microscope-server!302
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2025-06-23 16:12:25 +00:00 |
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Joe Knapper
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c6682f539d
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Correct spelling of Sangaboard
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2025-06-23 15:37:16 +00:00 |
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jaknapper
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62a07622fa
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If not provided, find resize from image size when stitching
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2025-06-23 15:09:18 +01:00 |
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jaknapper
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8ba40832e0
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Neighbour cutoff moved from autofocus.py to scan_planners.py
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2025-06-23 14:13:08 +01:00 |
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jaknapper
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2a0de9122b
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computed_field pydantic decorators
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2025-06-23 14:04:30 +01:00 |
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jaknapper
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ee128ad91f
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Rename to StackParams, move undershoots into Params
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2025-06-23 13:47:14 +01:00 |
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Julian Stirling
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c659ba8f5e
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Minor tidying to Picamera Thing
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2025-06-23 13:07:26 +01:00 |
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jaknapper
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7cff0f8f44
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StackInfo dataclass
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2025-06-23 12:56:31 +01:00 |
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Julian Stirling
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dd63d74651
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Removing mjpeg bitrate setter from UI and Python as it wasn't implemented fully and isn't a setting that should need changing
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2025-06-23 12:39:41 +01:00 |
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