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openflexure-microscope-server/CHANGELOG.md
Joel Collins 6435188334 v2.9.0
2020-12-07 14:42:15 +00:00

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# [v2.9.0](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.8.0...v2.9.0) (2020-12-07)
## Developer changes
### Extension loader
* **Updated default extensions to subclass structure ([8d0759e](https://gitlab.com/openflexure/openflexure-microscope-server/commit/8d0759e))**
* Updated documentation to subclass-based extensions ([bacc111](https://gitlab.com/openflexure/openflexure-microscope-server/commit/bacc111))
* Added type information to LABTHINGS_EXTENSIONS ([b8354d3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/b8354d3))
* Clarified LABTHINGS_EXTENSIONS in docs ([f849afd](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f849afd))
### Testing
* Added basic unit tests of non-integrated functions ([5137d1b](https://gitlab.com/openflexure/openflexure-microscope-server/commit/5137d1b))
### Static analysis
* Added extra type hints ([7ba3f44](https://gitlab.com/openflexure/openflexure-microscope-server/commit/7ba3f44))
* Added numpy types ([63b633b](https://gitlab.com/openflexure/openflexure-microscope-server/commit/63b633b))
* Added type hints to CSM extension ([311366c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/311366c))
* Fixed types in move_rel method ([ac667c3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/ac667c3))
* Static type analysis ([7866ec0](https://gitlab.com/openflexure/openflexure-microscope-server/commit/7866ec0))
* Stricter runtime type checks ([f2a2d88](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f2a2d88))
### Documentation
* Added better developer notes ([a3b1b8a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/a3b1b8a))
* Added changelog generator ([de6dbe4](https://gitlab.com/openflexure/openflexure-microscope-server/commit/de6dbe4))
### CI/CD
* Added eslint and cache to CI ([f5012cd](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f5012cd))
* Added job explanation comments ([c1e17de](https://gitlab.com/openflexure/openflexure-microscope-server/commit/c1e17de))
* Added poetry to script environment ([3814e7d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3814e7d))
* Allow code quality jobs to retry ([f15a5c7](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f15a5c7))
* Fixed JS artifact path ([3a90a42](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3a90a42))
## API functionality
* Added API route to convert LST to PNG ([4d40e81](https://gitlab.com/openflexure/openflexure-microscope-server/commit/4d40e81))
## JS Client
### New functionality
* Added log level filter ([4d1d0a1](https://gitlab.com/openflexure/openflexure-microscope-server/commit/4d1d0a1))
* Added options to invert navigation steps ([d49b34e](https://gitlab.com/openflexure/openflexure-microscope-server/commit/d49b34e))
* Added backlash and settle time settings ([c0fcd22](https://gitlab.com/openflexure/openflexure-microscope-server/commit/c0fcd22))
* Added stream and capture quality settings ([0f7cecb](https://gitlab.com/openflexure/openflexure-microscope-server/commit/0f7cecb))
### Fixes
* Fixed global state and scrolltotop ([ef9f257](https://gitlab.com/openflexure/openflexure-microscope-server/commit/ef9f257))
* Fixed individual captures creating 'undefined' dataset ([213dec3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/213dec3))
* Fixed onError propagation ([08f6532](https://gitlab.com/openflexure/openflexure-microscope-server/commit/08f6532))
* Fixed onScanError ([1de6b2a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/1de6b2a))
* globalUpdateCaptures after scan ([599c315](https://gitlab.com/openflexure/openflexure-microscope-server/commit/599c315))
* Handle missing this.$refs.textboxKey ref ([9d04842](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9d04842))
* Fixed IHI tab icon duplication bug ([e17366d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/e17366d))
### Design/style
* Added custom h4 formatting ([4ba4403](https://gitlab.com/openflexure/openflexure-microscope-server/commit/4ba4403))
* Rearranged element layout ([455b868](https://gitlab.com/openflexure/openflexure-microscope-server/commit/455b868))
* Rearranged settings and added LST download ([f0a3127](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f0a3127))
### Internal cleanup
* Common watch format ([3e783c5](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3e783c5))
* Removed unneeded plugin:vue/essential ([358d441](https://gitlab.com/openflexure/openflexure-microscope-server/commit/358d441))
* Removed unused webcomponent support ([f187a3a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f187a3a))
* * Moved backlash settings ([a2f8158](https://gitlab.com/openflexure/openflexure-microscope-server/commit/a2f8158))
## Server
### Features
* Added API route to convert LST to PNG ([4d40e81](https://gitlab.com/openflexure/openflexure-microscope-server/commit/4d40e81))
* Return LST as a file ([aba3eb3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/aba3eb3))
### Fixes
* Fixed "classic" autofocus 'PiCameraStreamer' object has no attribute 'annotate_text' error ([58b2967](https://gitlab.com/openflexure/openflexure-microscope-server/commit/58b2967))
* Fixed broken dataset rendering if key exists but is empty ([fd42e2e](https://gitlab.com/openflexure/openflexure-microscope-server/commit/fd42e2e))
* Fixed camera settings read ([25d3b15](https://gitlab.com/openflexure/openflexure-microscope-server/commit/25d3b15))
* Fixed get_locations method reference ([d288484](https://gitlab.com/openflexure/openflexure-microscope-server/commit/d288484))
* Fixed SangaDeltaStage type annotations ([9659c45](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9659c45))
* Fixed tile method reference ([18a0eed](https://gitlab.com/openflexure/openflexure-microscope-server/commit/18a0eed))
* Handle missing endpoints ([bc39277](https://gitlab.com/openflexure/openflexure-microscope-server/commit/bc39277))
### Internal API changes
* Deprecated camera `start_worker` and `get_frame` methods
* Added `start_worker` and `get_frame` aliases for compatibility ([bc9b80d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/bc9b80d))
* Replace top-level actions View with builtin LabThings ([421a2e3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/421a2e3))
* Updated to LabThings 1.2.1 ([249e301](https://gitlab.com/openflexure/openflexure-microscope-server/commit/249e301))
### Internal cleanup
* **Remove separate camera stream thread ([021745d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/021745d))**
* Cleaned up code layout ([da62126](https://gitlab.com/openflexure/openflexure-microscope-server/commit/da62126))
* Cleaned up main app setup ([e464086](https://gitlab.com/openflexure/openflexure-microscope-server/commit/e464086))
* Cleaned up store and removed unused FoV setting ([a1ae947](https://gitlab.com/openflexure/openflexure-microscope-server/commit/a1ae947))
* Code formatting ([dd81640](https://gitlab.com/openflexure/openflexure-microscope-server/commit/dd81640))
* Fixed unused imports ([b2192b2](https://gitlab.com/openflexure/openflexure-microscope-server/commit/b2192b2))
* Integrated CSMExtension ([9203545](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9203545))
* Moved frames_iterator scope ([3058c67](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3058c67))
* Moved gen() into streams.py ([c9c29a7](https://gitlab.com/openflexure/openflexure-microscope-server/commit/c9c29a7))
* Only use CompositeLock for microscope lock ([e433a89](https://gitlab.com/openflexure/openflexure-microscope-server/commit/e433a89))
* Reduced logging level of some mock camera notices ([8eff136](https://gitlab.com/openflexure/openflexure-microscope-server/commit/8eff136))
* Removed old console logs ([2e34722](https://gitlab.com/openflexure/openflexure-microscope-server/commit/2e34722))
* Removed old picamera_lst_path attribute ([85f77fa](https://gitlab.com/openflexure/openflexure-microscope-server/commit/85f77fa))
* Removed pointless abstract method implementations ([6d1f019](https://gitlab.com/openflexure/openflexure-microscope-server/commit/6d1f019))
* Removed unused pynpm package ([6819ded](https://gitlab.com/openflexure/openflexure-microscope-server/commit/6819ded))
* Tweaked deprecation warnings ([a844efc](https://gitlab.com/openflexure/openflexure-microscope-server/commit/a844efc))
* Updated dependencies ([3c3ecd7](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3c3ecd7))
# [2.8.0](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.8.0-beta.3b...v2.8.0) (2020-11-16)
* 2.8.0 ([729f101](https://gitlab.com/openflexure/openflexure-microscope-server/commit/729f101))
* Added documentation comments ([3eb2aa8](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3eb2aa8))
* Added frame iterator explanation comment ([90ccd0b](https://gitlab.com/openflexure/openflexure-microscope-server/commit/90ccd0b))
* Added use_video_port argument back to array() ([f51d4ff](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f51d4ff))
* Move stream frame management into FrameStream class ([f765540](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f765540))
# [2.8.0-beta.3b](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.8.0-beta.3...v2.8.0-beta.3b) (2020-11-13)
* 2.8.0-beta.3 ([73eda10](https://gitlab.com/openflexure/openflexure-microscope-server/commit/73eda10))
* Add pre-commit ([5119e2c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/5119e2c))
* Added full TileScanArgs schema ([3451b8a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3451b8a))
* Added note on manually running pre-commit ([36e837d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/36e837d))
* Added note on pre-commit ([0647a03](https://gitlab.com/openflexure/openflexure-microscope-server/commit/0647a03))
* Added rescue to Poetry scripts ([1f0b90c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/1f0b90c))
* Cleaned up Capture schemas ([84dcf4f](https://gitlab.com/openflexure/openflexure-microscope-server/commit/84dcf4f))
* Data-driven tab layout ([c645804](https://gitlab.com/openflexure/openflexure-microscope-server/commit/c645804))
* Extra comments ([c48c6d8](https://gitlab.com/openflexure/openflexure-microscope-server/commit/c48c6d8))
* Formatting ([6644819](https://gitlab.com/openflexure/openflexure-microscope-server/commit/6644819))
* Improved args schema for captures ([f681800](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f681800))
* Moved piexif into captures submodule ([7c450b6](https://gitlab.com/openflexure/openflexure-microscope-server/commit/7c450b6))
* Moved PyLint config back to pyproject.toml ([527bfeb](https://gitlab.com/openflexure/openflexure-microscope-server/commit/527bfeb))
* Removed default JSON files and submoduled JSON encoder class ([4a9d1c5](https://gitlab.com/openflexure/openflexure-microscope-server/commit/4a9d1c5))
* Removed duplicated code ([004ba0b](https://gitlab.com/openflexure/openflexure-microscope-server/commit/004ba0b))
* Removed now-redundant TODO comments ([c0f9f34](https://gitlab.com/openflexure/openflexure-microscope-server/commit/c0f9f34))
* Removed old JSONResponse class ([b350f62](https://gitlab.com/openflexure/openflexure-microscope-server/commit/b350f62))
* Removed pre-commit from Poetry dependencies ([00d30d8](https://gitlab.com/openflexure/openflexure-microscope-server/commit/00d30d8))
* Removed PyLint from pre-commit ([cb4afba](https://gitlab.com/openflexure/openflexure-microscope-server/commit/cb4afba))
* Removed unused files from root ([e25c23c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/e25c23c))
* Reverted logging style ([6fb61e1](https://gitlab.com/openflexure/openflexure-microscope-server/commit/6fb61e1))
* Style and linting ([f4b123c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f4b123c))
* Updated all log strings to new format ([9f52521](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9f52521))
* Updated to LabThings 1.1.3 ([738f527](https://gitlab.com/openflexure/openflexure-microscope-server/commit/738f527))
* Warn about unused settings when updating ([1e273be](https://gitlab.com/openflexure/openflexure-microscope-server/commit/1e273be))
# [2.8.0-beta.2](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.8.0-beta.1...v2.8.0-beta.2) (2020-11-11)
* 2.8.0-beta.2 ([8c180ca](https://gitlab.com/openflexure/openflexure-microscope-server/commit/8c180ca))
* Added submit button to API origin override form ([1e8978d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/1e8978d))
* Fixed tab switcher background height ([3387c27](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3387c27))
* Scroll to top when pagination switches ([fa909db](https://gitlab.com/openflexure/openflexure-microscope-server/commit/fa909db))
# [2.8.0-beta.1](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.8.0-beta.0...v2.8.0-beta.1) (2020-11-09)
* 2.8.0-beta.1 ([64aa565](https://gitlab.com/openflexure/openflexure-microscope-server/commit/64aa565))
* Added capture count warning ([9e887c0](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9e887c0))
* Added classes for error sources ([7043721](https://gitlab.com/openflexure/openflexure-microscope-server/commit/7043721))
* Added internet, RAM, and storage checkers ([5afff59](https://gitlab.com/openflexure/openflexure-microscope-server/commit/5afff59))
* Added newline symbols ([121afb4](https://gitlab.com/openflexure/openflexure-microscope-server/commit/121afb4))
* Added picamera import checker ([013aebd](https://gitlab.com/openflexure/openflexure-microscope-server/commit/013aebd))
* Added platform info to output ([8349b37](https://gitlab.com/openflexure/openflexure-microscope-server/commit/8349b37))
* Added stage tests and tidied up rescue ([0989a50](https://gitlab.com/openflexure/openflexure-microscope-server/commit/0989a50))
* Allow running tasks to be resumed ([ac382b7](https://gitlab.com/openflexure/openflexure-microscope-server/commit/ac382b7))
* Changed default pollInterval to 1s ([5a32e8a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/5a32e8a))
* Changed newline symbols ([061618d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/061618d))
* Changed reload to 60s timeout ([b98522a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/b98522a))
* Fixed duplicated polling timers ([fcd9fa4](https://gitlab.com/openflexure/openflexure-microscope-server/commit/fcd9fa4))
* Fixed GPU preview requests happening regardless of settings ([5feba6a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/5feba6a))
* Fixed ignored kwargs ([eae3124](https://gitlab.com/openflexure/openflexure-microscope-server/commit/eae3124))
* Formatting and linting ([e416563](https://gitlab.com/openflexure/openflexure-microscope-server/commit/e416563))
* Formatting and linting ([cd61ad3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/cd61ad3))
* Reduced long-term lock usage ([4c61f0c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/4c61f0c))
* Removed in-memory full metadata from CaptureObject ([9dab242](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9dab242))
* Removed port scanning warning ([5319beb](https://gitlab.com/openflexure/openflexure-microscope-server/commit/5319beb))
* Removed unused import ([cbea2f5](https://gitlab.com/openflexure/openflexure-microscope-server/commit/cbea2f5))
* Removed unused output ([471ee5e](https://gitlab.com/openflexure/openflexure-microscope-server/commit/471ee5e))
* Style and linting ([de135ab](https://gitlab.com/openflexure/openflexure-microscope-server/commit/de135ab))
* Support tuple-split strings as error messages ([f12671f](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f12671f))
* Tidied up logging ([06fb81e](https://gitlab.com/openflexure/openflexure-microscope-server/commit/06fb81e))
* Upped capture count warning to 10000 ([0647acd](https://gitlab.com/openflexure/openflexure-microscope-server/commit/0647acd))
# [2.8.0-beta.0](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.7.0...v2.8.0-beta.0) (2020-11-03)
* 2.8.0-beta.0 ([368f86c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/368f86c))
* Fixed reloading timestamp in new format ([86732b8](https://gitlab.com/openflexure/openflexure-microscope-server/commit/86732b8))
* Formatting ([32cf2de](https://gitlab.com/openflexure/openflexure-microscope-server/commit/32cf2de))
* Removed full capture metadata from top-level resource list ([b69c903](https://gitlab.com/openflexure/openflexure-microscope-server/commit/b69c903))
* Simplified build_captures_from_exif ([6c51da5](https://gitlab.com/openflexure/openflexure-microscope-server/commit/6c51da5))
* Updated client to simplify capture data ([982154c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/982154c))
# [2.7.0](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.6.5...v2.7.0) (2020-10-30)
* 2.7.0 ([c58827a](https://gitlab.com/openflexure/openflexure-microscope-server/commit/c58827a))
* Add header to put request to ensure string is sent ([97ff8d4](https://gitlab.com/openflexure/openflexure-microscope-server/commit/97ff8d4))
* Added API LogFileView ([f1d0ea5](https://gitlab.com/openflexure/openflexure-microscope-server/commit/f1d0ea5))
* Added download attribute to log file downloader ([3ba9718](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3ba9718))
* Added extra divider ([46120ea](https://gitlab.com/openflexure/openflexure-microscope-server/commit/46120ea))
* Added logger tab ([21b150b](https://gitlab.com/openflexure/openflexure-microscope-server/commit/21b150b))
* Added pagination to gallery ([e1cca30](https://gitlab.com/openflexure/openflexure-microscope-server/commit/e1cca30))
* Always use builtin JPEG thumbnails ([10d264c](https://gitlab.com/openflexure/openflexure-microscope-server/commit/10d264c))
* Code formatting ([ee8a2fc](https://gitlab.com/openflexure/openflexure-microscope-server/commit/ee8a2fc))
* Code formatting ([7f53ff2](https://gitlab.com/openflexure/openflexure-microscope-server/commit/7f53ff2))
* Code formatting ([76094b2](https://gitlab.com/openflexure/openflexure-microscope-server/commit/76094b2))
* Code formatting and linting ([250fd07](https://gitlab.com/openflexure/openflexure-microscope-server/commit/250fd07))
* Explicit JPEG thumbnail on capture ([09849ce](https://gitlab.com/openflexure/openflexure-microscope-server/commit/09849ce))
* Fixed capture link generator when passed a dict ([353450d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/353450d))
* Fixed gallery overflow ([e3a45b8](https://gitlab.com/openflexure/openflexure-microscope-server/commit/e3a45b8))
* Fixed incorrect import ([89b1f9d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/89b1f9d))
* Fixed node_modules exclusion from Black ([13b4c84](https://gitlab.com/openflexure/openflexure-microscope-server/commit/13b4c84))
* Fixed tab bar scrolling ([279cc03](https://gitlab.com/openflexure/openflexure-microscope-server/commit/279cc03))
* Fixed thumbnail data fallback ([32ec2b4](https://gitlab.com/openflexure/openflexure-microscope-server/commit/32ec2b4))
* Fixed thumbnail generation for video_port captures ([1f12154](https://gitlab.com/openflexure/openflexure-microscope-server/commit/1f12154))
* Fixed View import ([37c5e20](https://gitlab.com/openflexure/openflexure-microscope-server/commit/37c5e20))
* Only save configuration if successfully load new stage type ([b111a4e](https://gitlab.com/openflexure/openflexure-microscope-server/commit/b111a4e))
* Properly set up ESLint ([81ca64e](https://gitlab.com/openflexure/openflexure-microscope-server/commit/81ca64e))
* Rearranged main components ([eff03bf](https://gitlab.com/openflexure/openflexure-microscope-server/commit/eff03bf))
* Removed pointless GPU preview log ([3cfbb40](https://gitlab.com/openflexure/openflexure-microscope-server/commit/3cfbb40))
* Separated move_and_measure locks ([da490fd](https://gitlab.com/openflexure/openflexure-microscope-server/commit/da490fd))
* Upgraded to LabThings 1.1.2 ([654f722](https://gitlab.com/openflexure/openflexure-microscope-server/commit/654f722))
* Use `application/json` for put ([2f08bd3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/2f08bd3))
## [2.6.5](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.6.4...v2.6.5) (2020-10-26)
* 2.6.5 ([9ff0aa3](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9ff0aa3))
* Close #186 ([729e473](https://gitlab.com/openflexure/openflexure-microscope-server/commit/729e473)), closes [#186](https://gitlab.com/openflexure/openflexure-microscope-server/issues/186)
## [2.6.4](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.6.3...v2.6.4) (2020-10-26)
* 2.6.4 ([7a12dfb](https://gitlab.com/openflexure/openflexure-microscope-server/commit/7a12dfb))
* Added a settle time to all stage moves ([58f7686](https://gitlab.com/openflexure/openflexure-microscope-server/commit/58f7686))
* Added a spiral scan option ([ad8fd54](https://gitlab.com/openflexure/openflexure-microscope-server/commit/ad8fd54))
* Changed frame tracker logging level to debug ([9b4031f](https://gitlab.com/openflexure/openflexure-microscope-server/commit/9b4031f))
* Close #148 ([a258b63](https://gitlab.com/openflexure/openflexure-microscope-server/commit/a258b63)), closes [#148](https://gitlab.com/openflexure/openflexure-microscope-server/issues/148)
* Code formatting ([601e51d](https://gitlab.com/openflexure/openflexure-microscope-server/commit/601e51d))
* Fast AF use normal stream ([574f4a6](https://gitlab.com/openflexure/openflexure-microscope-server/commit/574f4a6))
* Reset tracker frames after each mode ([459a8dc](https://gitlab.com/openflexure/openflexure-microscope-server/commit/459a8dc))
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