Joel Collins
f123a29857
Updated readme
2019-02-05 17:12:29 +00:00
Joel Collins
5672b82f5e
Added many many debug statements to help debug issue #32
2019-02-05 17:06:05 +00:00
Joel Collins
0948c9308a
Went on a PEP-8 rampage
2019-01-31 17:20:46 +00:00
Joel Collins
f99ad30fb6
Started PEP-8-ing
2019-01-31 16:48:59 +00:00
Joel Collins
d4e7d067a3
Removed fraction conversion
2019-01-31 16:48:39 +00:00
Joel Collins
63336757d4
Better handle missing error.message
2019-01-31 16:48:19 +00:00
Joel Collins
04bed170a0
Added JSON safety to config reads
2019-01-31 16:47:54 +00:00
Joel Collins
0fd0cd8bac
Option to read a JSON-safe version of config (type conversion and exclusion of lens shading data)
2019-01-31 16:47:26 +00:00
Joel Collins
036fb82628
Moved calibration plugin to defaults. Save config when calibration finishes.
2019-01-31 16:46:34 +00:00
Joel Collins
8ed4cca19c
Added calibration plugin to defaults
2019-01-31 16:45:28 +00:00
Joel Collins
e9d74c07e6
Separated updating/writing from saving config
2019-01-31 13:51:02 +00:00
Joel Collins
8087e4d445
Updated to use apply_config and read_config instead of setters and getters
2019-01-31 13:34:14 +00:00
Joel Collins
5471ffa62b
Introduced apply_config and read_config methods
2019-01-31 13:29:07 +00:00
Joel Collins
e5c10adf8d
Rewritten to remove config redundancy
2019-01-31 13:28:15 +00:00
Joel Collins
cb122e5ef6
Moved static methods to functions
2019-01-31 13:27:35 +00:00
Joel Collins
323c48858d
Updated to use api_microscope.rc.asdict(), and minor formatting changes
2019-01-31 13:26:56 +00:00
Joel Collins
36b0cb0be0
Save config on server shutdown
2019-01-30 18:23:58 +00:00
Joel Collins
7a63451063
Added docstring
2019-01-30 18:23:48 +00:00
Joel Collins
92ac947982
Demoted missing attribute warning to debug
2019-01-30 18:23:40 +00:00
Joel Collins
cd1e450a2b
Fixed massive bug in config contraction
2019-01-30 18:23:26 +00:00
Joel Collins
e0c09b2845
Fixed plugin path
2019-01-30 18:22:54 +00:00
Joel Collins
f2a3261b03
Overhauled config loader to allow split configs
2019-01-30 17:45:11 +00:00
Joel Collins
f720e67700
Updated path to new autofocus plugin
2019-01-30 13:59:39 +00:00
Joel Collins
57537fe49f
Updated to new API routes
2019-01-30 13:58:32 +00:00
Joel Collins
4450ee132e
Moved autofocus plugin to its own module
2019-01-30 13:51:20 +00:00
Joel Collins
a6791d55ac
Plugin routes are now fully qualified
2019-01-30 13:51:09 +00:00
Joel Collins
0c156128fc
Minor formatting changes
2019-01-30 12:02:35 +00:00
Joel Collins
7ad1e7507f
Use a sensible error handler
2019-01-30 12:02:27 +00:00
Joel Collins
e6ddeaeb3a
Create lock even when stage is disconnected
2019-01-30 12:00:30 +00:00
Joel Collins
73eda19acc
Merge branch 'recalibration_plugin' into 'master'
...
A plugin to allow recalibration via the web API
See merge request openflexure/openflexure-microscope-server!4
2019-01-30 09:47:25 +00:00
Richard Bowman
416b74cb4a
A plugin to allow recalibration via the web API
...
This adds a plugin with a single endpoint, "recalibrate".
The recalibrate methods are deliberately simple and not aware
of the StreamingCamera because I want to share the maximum
amount of code with non-microscope projects that also want
to flatten the lens shading.
The plugin is microscope-specific, and therefore handles
shutting down the stream and managing the resolution of
the camera, to allow the calibration to run without
restarting the microscope server.
Currently it **DOES NOT SAVE SETTINGS**.
TODO: save the settings after recalibration.
Arguably this isn't a job for this plugin, what we would
need is:
* A method to sync the StreamingCamera's settings with the
underlying PiCamera object
* A method to save the StreamingCamera's settings to disk.
I think it would be neatest to provide the first of these as
a method of the StreamingCamera class, and call it from the
plugin. Saving the settings to disk (e.g. to the microscope
rc file, or to somewhere else) should be a separate endpoint
(although most interfaces will probably call it immediately
after recalibration).
2019-01-30 09:10:33 +00:00
Joel Collins
0aae79a2ad
Clarified the use of task IDs
2019-01-29 14:53:17 +00:00
Joel Collins
54106e845f
Rearranged self.plugin documentation
2019-01-29 14:49:04 +00:00
Joel Collins
397395f05f
Added responses to API route documentation
2019-01-29 14:43:39 +00:00
Joel Collins
6743882bf1
Corrected the abort code for missing resource
2019-01-29 14:43:22 +00:00
Joel Collins
36af9f84b5
Added scipy to requirements (used in autofocus)
2019-01-29 14:03:30 +00:00
Joel Collins
d7e19c40e2
Included Richards autofocus plugin in defaults
2019-01-29 13:54:47 +00:00
Joel Collins
cc36aa7593
Fixed a bug where malformed JSON payloads prevented default param values from returning
2019-01-29 13:54:32 +00:00
Joel Collins
bda946bcc9
Errors in plugins no longer caught as if the module just didn't exist
2019-01-29 13:42:32 +00:00
Joel Collins
485ebe9fb1
Added string representation of LocError
2019-01-29 13:41:46 +00:00
Joel Collins
b4d9840ed0
Added set_properties context manager
2019-01-29 13:41:35 +00:00
Joel Collins
e420252b37
Fixed recalibration stream stop/restart
2019-01-29 13:20:55 +00:00
Joel Collins
a11d2145d9
Fixed broken error handling for long-running tasks
2019-01-28 17:49:44 +00:00
Joel Collins
e3a27b024a
Iterated version numbers
2019-01-24 16:27:21 +00:00
Joel Collins
52583ad4ae
Iterated version number
2019-01-24 16:26:57 +00:00
Joel Collins
ea141ab0fc
Updated documentation
2019-01-24 16:24:22 +00:00
Joel Collins
465ed647d3
Fixed docstrings
2019-01-24 16:24:14 +00:00
Joel Collins
80cc74bd3d
Fixed plugin blueprint method name clashing
2019-01-24 14:14:25 +00:00
Joel Collins
e5fca6c8a0
Fixed broken type hint
2019-01-24 14:09:54 +00:00
Joel Collins
9860ace394
Fixed broken legacy import
2019-01-24 14:09:47 +00:00
