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2522 commits 1 branch 0 tags 24 MiB
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54 commits

Author SHA1 Message Date
Joe Knapper
ecbdd8a5bf Added measure_settling_time function to autofocus 2021-12-01 13:09:32 +00:00
Richard Bowman
040d7d4ba6 Fix action wrapper 
The action wrapper was using an unbound function - it
now passes the extension object as self.

We were incorrectly passing endpoint names as positional arguments -
this is fixed and I now use a keyword argument.
 2021-08-17 12:11:20 +01:00
Richard
ba0f78df84 fix typing in autofocus 
I have an Optional dz, which is then
populated with a default if it's None.
I've added an explicit cast() to explain this to mypy.
 2021-07-19 21:18:25 +01:00
Richard
72f3c11fdd linting and typing fixes 2021-07-19 20:29:13 +01:00
Richard
b7c9d3b73b Sorted remaining content_type issues and blackened 2021-07-19 20:09:09 +01:00
Richard
9892c7079a moved find_microscope into functions 2021-07-13 22:50:42 +01:00
Richard
c81c4eb64d Better API docs for autofocus extension 2021-07-06 15:24:17 +01:00
Richard Bowman
1cea75be70 Formatting fixes 2021-03-31 09:40:31 +01:00
Richard Bowman
e73ee8875c Fixed type annotations in autofocus and mock stage 
I don't know why these didn't fail before - possibly because of
incomplete type information from old numpy...
I removed a few annotations because they were failing (e.g.
np.sum can return a scalar or an array), but I don't think
this should be a problem - the function inputs and return values
are still typed.
 2021-03-30 17:51:00 +01:00
Richard Bowman
cd5e32b843 Removed deprecated np.float 
numpy 1.20 deprecates np.float, which was only ever an alias for
``float``.  I've replaced all occurrences of np.float with float, as
recommended.  There should be no change in functionality.
 2021-03-30 17:40:19 +01:00
Joel Collins
58b2967f53 Fixed autofocus 'PiCameraStreamer' object has no attribute 'annotate_text' error 2020-12-07 10:12:30 +00:00
Joel Collins
63b633ba44 2.9 dev numpy types 2020-12-04 13:35:11 +00:00
Joel Collins
8d0759e9e0 Updated default extensions to subclass structure 2020-11-30 16:41:39 +00:00
Joel Collins
7866ec0f47 Static type analysis 2020-11-30 13:36:45 +00:00
Joel Collins
6fb61e1e3f Reverted logging style 2020-11-12 15:45:58 +00:00
Joel Collins
9f5252194a Updated all log strings to new format 2020-11-12 15:12:17 +00:00
Joel Collins
da490fdfcd Separated move_and_measure locks 2020-10-28 15:40:29 +00:00
Joel Collins
459a8dc2a3 Reset tracker frames after each mode 2020-10-26 13:36:36 +00:00
Joel Collins
574f4a615d Fast AF use normal stream 2020-10-26 13:16:58 +00:00
Joel Collins
3c63d6a240 Overhauled autofocus tracker 2020-10-22 16:00:52 +01:00
Joel Collins
1677f0df76 Blackened 2020-10-19 18:34:58 +01:00
Joel Collins
51ff132633 Refactored fast_autofocus 2020-10-19 18:17:29 +01:00
Joel Collins
2186bf7aaa Add /updownup_autofocus view 2020-10-19 17:59:54 +01:00
Joel Collins
4ceb6bcafe Separate "classic" fast AF from up-down-up AF 2020-10-19 17:59:07 +01:00
Joel Collins
994e83dbeb Code cleanup 2020-10-14 14:56:29 +00:00
Joel Collins
2bfb988460 Code formatting 2020-10-13 15:02:19 +01:00
Joel Collins
345d497166 Fixed MoveAndMeasureAPI args schema 2020-09-30 16:27:28 +01:00
Joel Collins
317bde6371 Added MoveAndMeasureAPI view 2020-09-28 13:38:27 +01:00
Joel Collins
5c99da264f Added posh stop to slow autofocus 2020-07-22 16:11:13 +01:00
Joel Collins
24398ba7dc Updated tasks nomenclature 2020-07-21 12:54:42 +01:00
Joel Collins
29ee73cedc Fixed argument 'missing' values 2020-06-29 16:39:37 +01:00
Joel Collins
e6cb9f6b35 Initial 0.7.0 conversion 2020-06-29 15:24:59 +01:00
Joel Collins
9cecb477cb Flipped to explicit finite lock timeouts 2020-06-29 09:03:27 +01:00
Joel Collins
1819ca6a9c Switched to ActionView and PropertyView from decorators 2020-05-26 10:54:21 +01:00
Joel Collins
4a553040d3 Fixed logging and split access and root file handlers 2020-05-20 17:46:44 +01:00
Joel Collins
eaf4cf09f5 Updated to new Action tasks 2020-05-12 11:29:53 +01:00
Joel Collins
28e555ad9b Added explicit endpoints 2020-05-10 16:35:16 +01:00
Joel Collins
9646058c37 Code format 2020-04-28 13:20:38 +01:00
Joel Collins
6fcd8caf91 Merge branch 'autofocus-error-messages' into 'master' 
Autofocus error messages

See merge request openflexure/openflexure-microscope-server!54
 2020-04-24 15:14:37 +00:00
Joel Collins
cda5cdbb44 Switched away from using JSONify 2020-04-24 16:05:01 +01:00
Richard Bowman
be85d07210 Attempt to start the stream if it's stopped. 2020-04-23 11:22:14 +01:00
Richard Bowman
5a4aae8ed1 Added helpful errors if the stream has stopped 2020-04-23 11:15:10 +01:00
Richard Bowman
161c17812e Removed vestigial global statement 
There was a global declaration for the modules
np and logging, probably left over from running
this code in the dodgy console plugin.  I've
removed it as it's ugly, dodgy, and no longer
needed.
 2020-04-23 11:10:36 +01:00
Joel Collins
b9fb94d19d Added debug output and stage lock on fast autofocus 2020-03-27 14:17:11 +00:00
Joel Collins
10fa93d11c Iterated to 2.0.0 2020-03-24 10:22:49 +00:00
Joel Collins
65fc58c651 Fixed scan to use newer fast autofocus 2020-01-30 14:22:03 +00:00
jtc42
6df7fe9405 Blackened 2020-01-24 15:41:33 +00:00
jtc42
36334ed743 Moved to a LabThings dependency for server 2020-01-17 15:13:32 +00:00
Joel Collins
a329b9197b Renamed Resource to View, and allow custom root links 2020-01-14 11:41:56 +00:00
Joel Collins
4003e4e65c Renamed devices to components 2020-01-13 11:08:05 +00:00