Chish36
d035b186a2
Updated docstrings
2025-10-17 15:19:06 +01:00
Chish36
f0a67bac19
Type set and added default values to data tracker class
2025-10-17 15:19:06 +01:00
Chish36
4106d0348c
Delta is tracked with class now
2025-10-17 15:19:06 +01:00
Chish36
63bd34f548
Removed focus_data
2025-10-17 15:19:06 +01:00
Chish36
db0dc11274
Tracking correlations and stage coordinates with class now.
2025-10-17 15:19:06 +01:00
Chish36
47bc1479e2
Changed function names.
2025-10-17 15:19:06 +01:00
Chish36
703e8293d5
Rom data is now saved to settings.json
2025-10-17 15:19:06 +01:00
Chish36
f7264441e1
Updated labthings dependencies
2025-10-17 15:19:06 +01:00
Chish36
38906c8fff
Moved quadratic function to utilities file
2025-10-17 15:19:05 +01:00
Chish36
d494761cbb
Updated docstrings and fixed ruff errors
2025-10-17 15:19:05 +01:00
Chish36
1c7527c2ef
Parisitic motion is now tracked with an exception
2025-10-17 15:19:05 +01:00
Chish36
23d53949b4
Small moves and medium moves are now in separate functions
2025-10-17 15:19:05 +01:00
Chish36
61c3877202
Removed the need for steps_generate function
2025-10-17 15:19:05 +01:00
Chish36
e74ac9d859
Improved docstrings and type hints.
2025-10-17 15:19:05 +01:00
Chish36
e327305549
Docstring added
2025-10-17 15:19:05 +01:00
Chish36
b90ecf8c49
Motion detection is now a function and a few other minor tweaks
2025-10-17 15:19:05 +01:00
Chish36
ada120db9c
Minor tweaks to z_pred and lowered tolerance for failure
2025-10-17 15:19:05 +01:00
Chish36
154870142d
Optional autofocus and other minor tweaks
2025-10-17 15:19:05 +01:00
Chish36
725f993366
Typehints and docstrings added
2025-10-17 15:19:05 +01:00
Chish36
0267251a18
Move and measure and z predict are now separate functions
2025-10-17 15:19:05 +01:00
Chish36
71e21d1e72
Step range and all other data is saved to stage_measure thing
2025-10-17 15:19:05 +01:00
Chish36
e0b086bdc8
Added parisitic motion detect, z prediction and saved results
2025-10-17 15:19:05 +01:00
Chish36
eb01aaf017
Completes all necessary movements along a single axis
2025-10-17 15:19:05 +01:00
jaknapper
416830cbe8
Strip new lines when logging stitching
2025-10-10 12:27:09 +01:00
Julian Stirling
4135532476
Apply suggestions from code review of branch ce-disable
2025-10-09 17:46:13 +01:00
Joe Knapper
909de1709d
set ce_enable in tuning_utils
2025-10-09 15:36:01 +01:00
Julian Stirling
94541b2d4f
Merge branch 'stack-height-sanitise' into 'v3'
...
Verify stack params at start of scan main loop
Closes #455
See merge request openflexure/openflexure-microscope-server!400
2025-10-09 14:00:59 +00:00
Joe Knapper
089beae01a
Tests for coercing stack params to valid values.
...
Co-authored with Julian Stirling
2025-10-09 14:26:01 +01:00
Joe Knapper
fa6fdb1a67
Stack parameter coercion in create_stack_params
...
Co-authored with Julian Stirling
2025-10-09 14:23:47 +01:00
Joe Knapper
33ff356f76
Apply suggestions from code review of branch stack-height-sanitise
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-09 14:22:48 +01:00
Richard Bowman
c89db72d0a
Don't coerce or log from validators.
...
Passing a logger in to the Model is hard: I've changed the
StackParams model so that it only validates, and raises a
ValueError if it's not correct.
Pydantic will turn the ValueError into a ValidationError.
2025-10-09 14:22:45 +01:00
Joe Knapper
05e0394485
StackParams as pydantic basemodel with validators
2025-10-09 14:22:42 +01:00
Joe Knapper
f90e716d8e
Stack limits as globals
2025-10-09 14:22:40 +01:00
jaknapper
18e49ba50c
Test stack params at start of scan main loop
2025-10-09 14:22:37 +01:00
Julian Stirling
6a2d69ed04
Merge branch 'primary-buttons' into 'v3'
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Clean up primary vs secondary buttons
Closes #554
See merge request openflexure/openflexure-microscope-server!402
2025-10-07 14:15:45 +00:00
Joe Knapper
dae5b816cc
Merge branch 'sample-size-sim' into 'v3'
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Simulate a rectangular sample
Closes #516
See merge request openflexure/openflexure-microscope-server!401
2025-10-07 10:09:37 +00:00
Julian Stirling
7d794d1a22
Stop showing other picamera calibration buttons in calibration wizard
2025-10-07 10:52:06 +01:00
Joe Knapper
a34a9f99c5
Apply suggestions from code review of branch sample-size-sim
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-06 10:16:22 +00:00
jaknapper
a2facca43e
Clean up primary vs secondary buttons
2025-10-02 16:16:32 +01:00
Joe Knapper
2fc92fc1ff
Test sample and canvas size
2025-10-02 13:56:08 +01:00
Julian Stirling
4345f8c336
Merge branch 'tweak-scan-list' into 'v3'
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Scan list improvements
Closes #391
See merge request openflexure/openflexure-microscope-server!397
2025-09-29 08:55:13 +00:00
Joe Knapper
3812e9053a
Docstring fix
2025-09-26 17:16:55 +01:00
Joe Knapper
3deb5a4897
Merge branch 'cancel-scan-early-bugfix' into 'v3'
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Fix error trying to purge empty scans if current scan has no images
Closes #563
See merge request openflexure/openflexure-microscope-server!398
2025-09-26 09:33:21 +00:00
Joe Knapper
0a687e1678
Ruff
2025-09-25 18:51:33 +01:00
Joe Knapper
e6ba7f5a9b
Merge branch 'sample-size-sim' of gitlab.com:openflexure/openflexure-microscope-server into sample-size-sim
2025-09-25 16:14:17 +01:00
Joe Knapper
bfe0064ce8
Update dummy test and fix sample coords
2025-09-25 16:14:13 +01:00
Julian Stirling
14cc3f9fcf
Fix error trying to purge empty scans if current scan has no images
...
Closes #563
2025-09-25 15:12:34 +01:00
Joe Knapper
39b085a0c2
Apply suggestions from code review of branch sample-size-sim
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-09-25 13:35:55 +00:00
Joe Knapper
16bc7aeede
Apply suggestions from code review of branch sample-size-sim
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-09-25 13:33:16 +00:00
Joe Knapper
d3aeb75ed9
Fixed centre typo
2025-09-25 12:52:17 +01:00
