Joe Knapper
be5087b9ca
Merge branch 'colourful-dragon' into 'v3'
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Colour sliders in seadragon viewer
See merge request openflexure/openflexure-microscope-server!409
2025-10-21 15:43:45 +00:00
Joe Knapper
073ef2cae5
Merge branch 'camera-defaults-patch' into 'v3'
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Set colour correction to interpolate value
See merge request openflexure/openflexure-microscope-server!414
2025-10-21 15:08:46 +00:00
Julian Stirling
4c1dcdb8d1
Tidy up HTML spacing and styling
2025-10-21 16:05:53 +01:00
Julian Stirling
5c2d61baaa
Refactor brightness, contrast, and saturation filters into Vue props.
2025-10-21 15:33:12 +01:00
jaknapper
ab0e00eb1d
Fix ruff
2025-10-21 15:30:47 +01:00
jaknapper
d913db92af
CCM for HQ cam also
2025-10-21 15:14:42 +01:00
jaknapper
18ad404a57
Set colour correction to interpolate value
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Update hardware test readme
Add pause between calibrating camera and setting background
2025-10-21 13:37:50 +01:00
Julian Stirling
e51fbb4fa6
Merge branch 'improve-scan-planning' into 'v3'
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Improve smart spiral scan planner to better capture the edge of scamples
Closes #559
See merge request openflexure/openflexure-microscope-server!411
2025-10-20 17:58:17 +00:00
Julian Stirling
ff606ff10d
Apply spelling corrections and variable renaming from code review of branch improve-scan-planning
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-10-20 18:26:20 +01:00
Julian Stirling
dbb0a4ac16
Fix issues found by MyPy
2025-10-19 23:04:24 +01:00
Julian Stirling
f781e6b674
Image intermediate locations between sample and background
2025-10-19 21:29:11 +01:00
Julian Stirling
39a04df5be
Objects for scan locations allowing more sophisitcated tracking.
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This commit updates the scan planners to allow more sophisticated
tracking of past positions. Currently it still checks that
the algorithm is unchanged from past behaviour.
2025-10-19 19:55:36 +01:00
jaknapper
0be62d773d
Scan viewer component
2025-10-17 18:39:29 +01:00
Julian Stirling
3d3ca9ebcf
Merge branch 'log-lines' into 'v3'
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Strip new lines when logging stitching
Closes #567
See merge request openflexure/openflexure-microscope-server!406
2025-10-17 13:17:49 +00:00
jaknapper
19913b8f48
Limit brightness and contrast, move sliders to high z to avoid collisions
2025-10-16 12:45:14 +01:00
jaknapper
fb3658c933
Colour sliders in seadragon viewer
2025-10-16 11:47:30 +01:00
Joe Knapper
f23c8cd490
Merge branch 'fix-jitter' into 'v3'
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Fix jitter at specific screen sizes during scan
See merge request openflexure/openflexure-microscope-server!404
2025-10-10 14:14:34 +00:00
jaknapper
416830cbe8
Strip new lines when logging stitching
2025-10-10 12:27:09 +01:00
Julian Stirling
97fe2f357d
Merge branch 'bump-version-for-alpha3' into 'v3'
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Bump version for alpha3 and update changelog
See merge request openflexure/openflexure-microscope-server!405
2025-10-09 22:28:42 +00:00
Julian Stirling
96ffbb2b49
Bump version for alpha3 and update changelog
2025-10-09 19:55:42 +01:00
Julian Stirling
513a9e40bd
Merge branch 'document_simulation' into 'v3'
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Improve documentation for simulation server
Closes #517
See merge request openflexure/openflexure-microscope-server!390
2025-10-09 17:45:54 +00:00
Julian Stirling
c6bda196b1
Merge branch 'ce-disable' into 'v3'
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Ce disable
Closes #553
See merge request openflexure/openflexure-microscope-server!403
2025-10-09 17:45:49 +00:00
jaknapper
b58ddbf7d9
Update testing
2025-10-09 17:51:15 +01:00
Julian Stirling
4135532476
Apply suggestions from code review of branch ce-disable
2025-10-09 17:46:13 +01:00
Julian Stirling
46f3a8d5de
Fix jitter at specific screen sizes during scan
2025-10-09 17:00:45 +01:00
Chish36
38c991d232
Minor corrections applied
2025-10-09 15:53:57 +01:00
Chish36
e56a11ef66
Added more info on starting the simulation server and some basic instructions on simulating a scan
2025-10-09 15:51:26 +01:00
Joe Knapper
909de1709d
set ce_enable in tuning_utils
2025-10-09 15:36:01 +01:00
Julian Stirling
94541b2d4f
Merge branch 'stack-height-sanitise' into 'v3'
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Verify stack params at start of scan main loop
Closes #455
See merge request openflexure/openflexure-microscope-server!400
2025-10-09 14:00:59 +00:00
Joe Knapper
089beae01a
Tests for coercing stack params to valid values.
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Co-authored with Julian Stirling
2025-10-09 14:26:01 +01:00
Joe Knapper
fa6fdb1a67
Stack parameter coercion in create_stack_params
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Co-authored with Julian Stirling
2025-10-09 14:23:47 +01:00
Joe Knapper
33ff356f76
Apply suggestions from code review of branch stack-height-sanitise
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-09 14:22:48 +01:00
Richard Bowman
c89db72d0a
Don't coerce or log from validators.
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Passing a logger in to the Model is hard: I've changed the
StackParams model so that it only validates, and raises a
ValueError if it's not correct.
Pydantic will turn the ValueError into a ValidationError.
2025-10-09 14:22:45 +01:00
Joe Knapper
05e0394485
StackParams as pydantic basemodel with validators
2025-10-09 14:22:42 +01:00
Joe Knapper
f90e716d8e
Stack limits as globals
2025-10-09 14:22:40 +01:00
jaknapper
18e49ba50c
Test stack params at start of scan main loop
2025-10-09 14:22:37 +01:00
Julian Stirling
6a2d69ed04
Merge branch 'primary-buttons' into 'v3'
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Clean up primary vs secondary buttons
Closes #554
See merge request openflexure/openflexure-microscope-server!402
2025-10-07 14:15:45 +00:00
Joe Knapper
dae5b816cc
Merge branch 'sample-size-sim' into 'v3'
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Simulate a rectangular sample
Closes #516
See merge request openflexure/openflexure-microscope-server!401
2025-10-07 10:09:37 +00:00
Julian Stirling
92b14265d1
Update picamera test results
2025-10-07 10:59:18 +01:00
Julian Stirling
7d794d1a22
Stop showing other picamera calibration buttons in calibration wizard
2025-10-07 10:52:06 +01:00
Joe Knapper
a34a9f99c5
Apply suggestions from code review of branch sample-size-sim
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-06 10:16:22 +00:00
jaknapper
a2facca43e
Clean up primary vs secondary buttons
2025-10-02 16:16:32 +01:00
Joe Knapper
2fc92fc1ff
Test sample and canvas size
2025-10-02 13:56:08 +01:00
Julian Stirling
4345f8c336
Merge branch 'tweak-scan-list' into 'v3'
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Scan list improvements
Closes #391
See merge request openflexure/openflexure-microscope-server!397
2025-09-29 08:55:13 +00:00
Joe Knapper
3812e9053a
Docstring fix
2025-09-26 17:16:55 +01:00
Joe Knapper
3deb5a4897
Merge branch 'cancel-scan-early-bugfix' into 'v3'
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Fix error trying to purge empty scans if current scan has no images
Closes #563
See merge request openflexure/openflexure-microscope-server!398
2025-09-26 09:33:21 +00:00
Joe Knapper
0a687e1678
Ruff
2025-09-25 18:51:33 +01:00
Joe Knapper
e6ba7f5a9b
Merge branch 'sample-size-sim' of gitlab.com:openflexure/openflexure-microscope-server into sample-size-sim
2025-09-25 16:14:17 +01:00
Joe Knapper
bfe0064ce8
Update dummy test and fix sample coords
2025-09-25 16:14:13 +01:00
Julian Stirling
91c4fb22db
Remove checks that purge empty scans is run in run_scan as it has moved
2025-09-25 15:16:23 +01:00
