Chish36
6579a65f84
Made changes based on ruff-lint-increased feedback
2025-10-17 15:19:06 +01:00
Chish36
32129125d6
Fixed spelling
2025-10-17 15:19:06 +01:00
Chish36
8ce7f9f779
Removed empty lines
2025-10-17 15:19:06 +01:00
Chish36
d035b186a2
Updated docstrings
2025-10-17 15:19:06 +01:00
Chish36
f0a67bac19
Type set and added default values to data tracker class
2025-10-17 15:19:06 +01:00
Chish36
4106d0348c
Delta is tracked with class now
2025-10-17 15:19:06 +01:00
Chish36
63bd34f548
Removed focus_data
2025-10-17 15:19:06 +01:00
Chish36
db0dc11274
Tracking correlations and stage coordinates with class now.
2025-10-17 15:19:06 +01:00
Chish36
47bc1479e2
Changed function names.
2025-10-17 15:19:06 +01:00
Chish36
703e8293d5
Rom data is now saved to settings.json
2025-10-17 15:19:06 +01:00
Chish36
f7264441e1
Updated labthings dependencies
2025-10-17 15:19:06 +01:00
Chish36
38906c8fff
Moved quadratic function to utilities file
2025-10-17 15:19:05 +01:00
Chish36
d494761cbb
Updated docstrings and fixed ruff errors
2025-10-17 15:19:05 +01:00
Chish36
1c7527c2ef
Parisitic motion is now tracked with an exception
2025-10-17 15:19:05 +01:00
Chish36
23d53949b4
Small moves and medium moves are now in separate functions
2025-10-17 15:19:05 +01:00
Chish36
61c3877202
Removed the need for steps_generate function
2025-10-17 15:19:05 +01:00
Chish36
e74ac9d859
Improved docstrings and type hints.
2025-10-17 15:19:05 +01:00
Chish36
e327305549
Docstring added
2025-10-17 15:19:05 +01:00
Chish36
b90ecf8c49
Motion detection is now a function and a few other minor tweaks
2025-10-17 15:19:05 +01:00
Chish36
ada120db9c
Minor tweaks to z_pred and lowered tolerance for failure
2025-10-17 15:19:05 +01:00
Chish36
154870142d
Optional autofocus and other minor tweaks
2025-10-17 15:19:05 +01:00
Chish36
0bf3b4210a
Added stage measure to config list
2025-10-17 15:19:05 +01:00
Chish36
725f993366
Typehints and docstrings added
2025-10-17 15:19:05 +01:00
Chish36
0267251a18
Move and measure and z predict are now separate functions
2025-10-17 15:19:05 +01:00
Chish36
71e21d1e72
Step range and all other data is saved to stage_measure thing
2025-10-17 15:19:05 +01:00
Chish36
e0b086bdc8
Added parisitic motion detect, z prediction and saved results
2025-10-17 15:19:05 +01:00
Chish36
eb01aaf017
Completes all necessary movements along a single axis
2025-10-17 15:19:05 +01:00
Julian Stirling
3d3ca9ebcf
Merge branch 'log-lines' into 'v3'
...
Strip new lines when logging stitching
Closes #567
See merge request openflexure/openflexure-microscope-server!406
2025-10-17 13:17:49 +00:00
jaknapper
19913b8f48
Limit brightness and contrast, move sliders to high z to avoid collisions
2025-10-16 12:45:14 +01:00
jaknapper
fb3658c933
Colour sliders in seadragon viewer
2025-10-16 11:47:30 +01:00
Joe Knapper
841c340cdf
Scan data card centres lists, displays duration
2025-10-14 17:50:17 +01:00
Joe Knapper
f23c8cd490
Merge branch 'fix-jitter' into 'v3'
...
Fix jitter at specific screen sizes during scan
See merge request openflexure/openflexure-microscope-server!404
2025-10-10 14:14:34 +00:00
jaknapper
416830cbe8
Strip new lines when logging stitching
2025-10-10 12:27:09 +01:00
Julian Stirling
97fe2f357d
Merge branch 'bump-version-for-alpha3' into 'v3'
...
Bump version for alpha3 and update changelog
See merge request openflexure/openflexure-microscope-server!405
2025-10-09 22:28:42 +00:00
Julian Stirling
96ffbb2b49
Bump version for alpha3 and update changelog
2025-10-09 19:55:42 +01:00
Julian Stirling
513a9e40bd
Merge branch 'document_simulation' into 'v3'
...
Improve documentation for simulation server
Closes #517
See merge request openflexure/openflexure-microscope-server!390
2025-10-09 17:45:54 +00:00
Julian Stirling
c6bda196b1
Merge branch 'ce-disable' into 'v3'
...
Ce disable
Closes #553
See merge request openflexure/openflexure-microscope-server!403
2025-10-09 17:45:49 +00:00
jaknapper
b58ddbf7d9
Update testing
2025-10-09 17:51:15 +01:00
Julian Stirling
4135532476
Apply suggestions from code review of branch ce-disable
2025-10-09 17:46:13 +01:00
Julian Stirling
46f3a8d5de
Fix jitter at specific screen sizes during scan
2025-10-09 17:00:45 +01:00
Chish36
38c991d232
Minor corrections applied
2025-10-09 15:53:57 +01:00
Chish36
e56a11ef66
Added more info on starting the simulation server and some basic instructions on simulating a scan
2025-10-09 15:51:26 +01:00
Joe Knapper
909de1709d
set ce_enable in tuning_utils
2025-10-09 15:36:01 +01:00
Julian Stirling
94541b2d4f
Merge branch 'stack-height-sanitise' into 'v3'
...
Verify stack params at start of scan main loop
Closes #455
See merge request openflexure/openflexure-microscope-server!400
2025-10-09 14:00:59 +00:00
Joe Knapper
089beae01a
Tests for coercing stack params to valid values.
...
Co-authored with Julian Stirling
2025-10-09 14:26:01 +01:00
Joe Knapper
fa6fdb1a67
Stack parameter coercion in create_stack_params
...
Co-authored with Julian Stirling
2025-10-09 14:23:47 +01:00
Joe Knapper
33ff356f76
Apply suggestions from code review of branch stack-height-sanitise
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-09 14:22:48 +01:00
Richard Bowman
c89db72d0a
Don't coerce or log from validators.
...
Passing a logger in to the Model is hard: I've changed the
StackParams model so that it only validates, and raises a
ValueError if it's not correct.
Pydantic will turn the ValueError into a ValidationError.
2025-10-09 14:22:45 +01:00
Joe Knapper
05e0394485
StackParams as pydantic basemodel with validators
2025-10-09 14:22:42 +01:00
Joe Knapper
f90e716d8e
Stack limits as globals
2025-10-09 14:22:40 +01:00
