Julian Stirling
dec90f5b6b
Update legacy_api.py test_sangaboard and test_server_cli so tests pass for labthings-fastapi 0.0.12
2025-12-14 20:53:33 +00:00
Julian Stirling
70fc3516e6
Update test_camera and test_dummy_server for labthings-fastapi 0.0.12
2025-12-14 20:04:48 +00:00
Julian Stirling
0c3de60629
Update test_cameras to use create_thing_without_server
2025-12-14 19:46:57 +00:00
Julian Stirling
cfbb7cf7f9
Start fixing tests. This involves further blocking portal changes.
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This will need PR 225 of labthings-fastapi to be merged to run.
2025-12-14 19:21:06 +00:00
Julian Stirling
9ef417971f
Remove a load more /names/
2025-12-14 18:23:33 +00:00
Julian Stirling
e7f669cb56
No blocking portals
2025-12-14 18:23:33 +00:00
Julian Stirling
5eea78cac7
update action, property, and setting syntax for labthings-fastapi 0.0.12
2025-12-14 18:23:26 +00:00
Julian Stirling
5375e9578b
Update version for alpha 4 release and update changelog
2025-12-08 15:07:14 +00:00
Julian Stirling
7bc4c514a6
Autofix import order
2025-12-02 16:26:15 +00:00
Joe Knapper
99afe89c10
Merge branch 'scanning-stability' into 'v3'
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Improve the stability of scanning
Closes #599 and #600
See merge request openflexure/openflexure-microscope-server!434
2025-12-02 15:47:03 +00:00
Julian Stirling
38c596fb49
Merge branch 'Sanga-firmware-check' into 'v3'
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Log an error if the sangaboard firmware is below v1.0.4
Closes #623
See merge request openflexure/openflexure-microscope-server!447
2025-12-02 15:14:50 +00:00
Julian Stirling
240b7d1ba5
Use semver library for checking sangaboard firmware version.
2025-12-02 11:55:56 +00:00
Julian Stirling
797dda3514
Add failing unit test for sangaboard version before v1
2025-12-02 11:00:41 +00:00
Julian Stirling
9b58f4d59e
Apply suggestions from code review of branch scanning-stability
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-12-02 09:57:25 +00:00
Julian Stirling
2749a1818c
Add unit tests for ChannelDeviationLUV background detector
2025-12-02 09:57:25 +00:00
Julian Stirling
e5d2ebbb79
Add tests for checking stack result
2025-12-02 09:57:24 +00:00
Julian Stirling
a15f23bec2
Add unit tests for captureing images in a stack
2025-12-02 09:57:24 +00:00
Julian Stirling
573330dede
Add tests for z_stack
2025-12-02 09:57:24 +00:00
Julian Stirling
b9c58b70c9
Looping autofocus errors on failure to find focus. Test looping autofocus algorithm
2025-12-02 09:57:24 +00:00
Julian Stirling
13e065a44d
Add test for the outer smart stack algorithm
2025-12-02 09:57:24 +00:00
Julian Stirling
a5d5ba4af8
Update scan planner test pickles
2025-11-28 12:00:35 +00:00
Julian Stirling
dfe7fb6c42
Stop scan planner plots erroring if there are no secondary locations
2025-11-28 12:00:35 +00:00
Julian Stirling
cd53024c4f
Update the scan test helpers so it is easier to save and plot
2025-11-28 09:52:09 +00:00
Julian Stirling
3ecc41720d
Merge branch 'recentre-with-rom-methods' into 'v3'
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Recentre using RangeOfMotionThing methods
Closes #499 and #573
See merge request openflexure/openflexure-microscope-server!429
2025-11-11 17:49:08 +00:00
Julian Stirling
b0b755f19b
Update unit tests for algorithmic change to recentre
2025-11-11 17:13:52 +00:00
Julian Stirling
982c55905c
Update default exposure in picam and defaul LST values in tuning files, and set default colour gains from LST
2025-11-11 11:20:08 +00:00
Julian Stirling
13d3871059
Add testing for loading the tuning files in the normal test suite now not tied to picamera
2025-11-11 11:20:08 +00:00
Julian Stirling
ec16cc17f8
Update tuning file utils for our own tuning files.
2025-11-11 11:20:07 +00:00
Julian Stirling
f7d03d8c00
Fix confusion between (x,y) image coordinates and (y,x) matrix indicies
2025-11-05 13:19:28 +00:00
Julian Stirling
dcf4b0b383
Split the logic for deciding how to move in recentre from the moves and the main loop
2025-11-05 11:43:25 +00:00
Julian Stirling
7f0e7c52f9
Test everything remainign in recentre except the main algorithm for an axis
2025-11-05 00:36:43 +00:00
Julian Stirling
a5a372b6c0
Split out matix calculations from CSM, and continue testing recentre
2025-11-05 00:15:30 +00:00
Julian Stirling
c659a556cc
Update stage_measure test data to be more parabolic and add turning point test
2025-11-04 18:54:15 +00:00
Julian Stirling
b09aa7b5b8
First interation of a recentre algoritm build on ROM test methods
2025-11-04 18:54:15 +00:00
Julian Stirling
cd5d74b5e6
Add tests for not reading ongoing scan data
2025-11-04 18:50:17 +00:00
Julian Stirling
e4cb48eb6d
Stricter rules on pytest.raises, requiring match for generic error types
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Closes #560
2025-10-28 17:20:40 +00:00
Julian Stirling
adf9736fab
Add testing for patching json files
2025-10-27 15:07:45 +00:00
Julian Stirling
9e9764e196
Implement JSON Merge Patch from IETF RFC 7396
2025-10-27 15:07:43 +00:00
Julian Stirling
418a6b5364
Merge branch 'calibration-wizard-refactor' into 'v3'
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Refactor Calibration Wizard
Closes #578
See merge request openflexure/openflexure-microscope-server!415
2025-10-27 14:15:05 +00:00
Julian Stirling
94c9a0e7dd
Merge branch 'rom_test_only' into 'v3'
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Adding automatic range of motion measurements
See merge request openflexure/openflexure-microscope-server!335
2025-10-27 12:18:31 +00:00
Julian Stirling
df979eb3cf
Add checks for new calibration required property to tests
2025-10-26 15:47:41 +00:00
Julian Stirling
08046ff657
Clarify behaviour of overloads, and better error checking of _move_and_measure inputs
2025-10-24 17:27:43 +01:00
Julian Stirling
ba8a4ca744
Apply suggestions from code review of branch rom_test_only
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-10-24 14:05:07 +00:00
Julian Stirling
b8eb1907c3
Modify range of motion _move_back_until_motion_detected to move in SMALL_STEP steps
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This will carry on until at least 1.5x BIG_STEP in total motion. If
no motion is detected then something is up.
2025-10-21 14:40:18 +01:00
Julian Stirling
7f657ae853
No error on parasitic motion after small step checking for stage movement, use background detect
2025-10-20 23:02:08 +01:00
Julian Stirling
72c35c302c
Adjust CSM Thing to allow calculation of stage coords from img coords and use this in stage measure
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Using this stops the z-axis being flipped when the off diagonal elements of the CSM are different
signs.
2025-10-20 22:20:19 +01:00
Julian Stirling
ff606ff10d
Apply spelling corrections and variable renaming from code review of branch improve-scan-planning
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-10-20 18:26:20 +01:00
Julian Stirling
635375a012
Fix assumption that CSM was a numpy array not a list
2025-10-20 16:40:41 +01:00
Julian Stirling
f781e6b674
Image intermediate locations between sample and background
2025-10-19 21:29:11 +01:00
Julian Stirling
39a04df5be
Objects for scan locations allowing more sophisitcated tracking.
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This commit updates the scan planners to allow more sophisticated
tracking of past positions. Currently it still checks that
the algorithm is unchanged from past behaviour.
2025-10-19 19:55:36 +01:00
