Image intermediate locations between sample and background
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parent
39a04df5be
commit
f781e6b674
6 changed files with 90 additions and 23 deletions
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@ -302,14 +302,6 @@ def test_example_smart_spiral():
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expected_planner = (
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scan_test_helpers.get_expected_result_for_example_smart_spiral(sample_name)
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)
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# Use hasattr to check if the saved test data is the old object where imaged
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# locations were saved directly as a list of tuples rather than being generated
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# from a history of VisitedScanLocation objects.
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# This "if" section of this if-else block can be deleted once we are confident
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# of the new format and the pickles are updated
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if hasattr(expected_planner, "_imaged_locations"):
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assert planner.path_history == expected_planner._path_history
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assert planner.imaged_locations == expected_planner._imaged_locations
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else:
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assert planner.path_history == expected_planner.path_history
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assert planner.imaged_locations == expected_planner.imaged_locations
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assert planner.path_history == expected_planner.path_history
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assert planner.imaged_locations == expected_planner.imaged_locations
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@ -62,6 +62,7 @@ def visualise_scan(sample: FakeSample, planner: scan_planners.ScanPlanner) -> Fi
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ax.add_artist(sample.patch)
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xh, yh = zip(*planner.path_history, strict=True)
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xi, yi, _zi = zip(*planner.imaged_locations, strict=True)
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xs, ys, _zs = zip(*planner.secondary_locations, strict=True)
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# convert history to numpy array so can calculate quiver arrows
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xh = np.array(xh)
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@ -78,6 +79,7 @@ def visualise_scan(sample: FakeSample, planner: scan_planners.ScanPlanner) -> Fi
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)
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plt.plot(xh, yh, "r.")
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plt.plot(xi, yi, "g*")
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plt.plot(xs, ys, "o", mfc="none", mec="blue")
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ax.axis("equal")
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return fig
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