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Author SHA1 Message Date
jaknapper
8ba40832e0 Neighbour cutoff moved from autofocus.py to scan_planners.py 2025-06-23 14:13:08 +01:00
jaknapper
2a0de9122b computed_field pydantic decorators 2025-06-23 14:04:30 +01:00
jaknapper
ee128ad91f Rename to StackParams, move undershoots into Params 2025-06-23 13:47:14 +01:00
jaknapper
7cff0f8f44 StackInfo dataclass 2025-06-23 12:56:31 +01:00
jaknapper
8fea35a663 Remove duplicate docstring 2025-06-23 12:05:52 +01:00
jaknapper
333ea1b644 More input validation and comments 2025-06-23 12:02:00 +01:00
Joe Knapper
7a7547542c Apply suggestions from code review of branch fast-stack 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-06-23 10:36:26 +00:00
jaknapper
f6cc7403e3 Update test_smart_spiral_first_few_pos() as smart stack chooses a different z_estimate 2025-06-20 15:01:09 +01:00
jaknapper
a001da0bcb Restore closest_focus_site function 2025-06-20 15:01:09 +01:00
Joe Knapper
d1ed7ec797 Apply suggestions from code review of branch fast-stack 2025-06-20 11:26:58 +00:00
Joe Knapper
006d3b2a7b Apply suggestions from code review of branch fast-stack 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-20 11:23:14 +00:00
jaknapper
ce33b94aab Capture as a Raw dependency to use methods that aren't actions 2025-06-20 12:19:07 +01:00
jaknapper
6cf2f4d8c3 Typehints and docstrings in z_stack 2025-06-19 14:58:16 +01:00
jaknapper
00321d761d Update docstring for nearby focus site 2025-06-19 14:57:27 +01:00
jaknapper
6acfbaefd6 Split up z stack function 2025-06-18 18:36:21 +01:00
jaknapper
c0677858a1 Scan planner finds lowest neighbour, not most recent 2025-06-18 15:40:21 +01:00
jaknapper
1d4bb7363f Images to test control in GUI 2025-06-17 14:34:42 +01:00
jaknapper
e8c4103bb0 Remove unneeded logging 2025-06-17 14:34:42 +01:00
jaknapper
f363ec0eff Docstring for test_stack 2025-06-17 14:34:42 +01:00
jaknapper
dbb65d55b5 Use scan autofocus dz 2025-06-17 14:34:42 +01:00
jaknapper
cdd603d751 Capture the full stack requested 2025-06-17 14:34:42 +01:00
jaknapper
0671f2d1be Backlash correction as global, more comments 2025-06-17 14:34:42 +01:00
jaknapper
712f524414 Looping autofocus on failed smart stack 2025-06-17 14:34:42 +01:00
jaknapper
3e164102f6 A stack that tests whether the sharpest image is towards the middle 2025-06-17 14:34:42 +01:00
Julian Stirling
67e8b19603 Merge branch 'remove-nav-spinners-firefox' into 'v3' 
Remove numerical input spinners for x,y,z settings in Firefox

See merge request openflexure/openflexure-microscope-server!288
 2025-06-16 12:15:42 +00:00
Julian Stirling
c43b7cb8b4 Merge branch 'more-checkers' into 'v3' 
Enable more lint checkers

See merge request openflexure/openflexure-microscope-server!290
 2025-06-12 11:56:29 +00:00
Julian Stirling
37bb9635ad Apply 2 suggestion(s) to 2 file(s) 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-12 10:29:54 +00:00
Julian Stirling
3019e13c80 Add commented out code check to linters 2025-06-11 23:40:49 +01:00
Julian Stirling
86dad84a5a Merge branch 'correct-alpha-version-changelog' into 'v3' 
Correct version name in change beta1 -> alpha1

See merge request openflexure/openflexure-microscope-server!291
 2025-06-11 12:50:12 +00:00
Julian Stirling
fe26a299d5 Correct version name in change beta1 -> alpha1 2025-06-11 10:08:16 +00:00
Julian Stirling
04832892cc Chnge docstring tester from Doc to D as Doc has no effect 2025-06-10 16:07:49 +01:00
Julian Stirling
1c54d25212 Add ruff checking for unnecessary comprehensions 2025-06-10 16:07:49 +01:00
Julian Stirling
2050c2dc7c Add return checker, needed 4 fixes 2025-06-10 16:07:48 +01:00
Julian Stirling
3f0564f253 Turning on more lint checkers, warning for cameras that ignore resolution setting 2025-06-10 16:07:48 +01:00
Julian Stirling
cf80120572 Remove numerical input spinners for x,y,z settings in Firefox 
Chrome/Safari/Edge etc are all set already by the
`.numeric-setting-line-input::-webkit-outer-spin-button`
and
`.numeric-setting-line-input::-webkit-inner-spin-button`

but firefox needs a different line set on the input itself see:
https://www.w3schools.com/howto/howto_css_hide_arrow_number.asp
 2025-06-10 08:47:23 +01:00
Julian Stirling
6c6356bf38 Merge branch 'final-changes-for-v3.0.0-alpha1' into 'v3' 
Update depedencies and changelog prior to v3.0.0-alpha1 release

Closes #398

See merge request openflexure/openflexure-microscope-server!287
 2025-06-09 15:38:56 +00:00
Julian Stirling
e223405444 Tweak changelog and add MR list 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
Co-authored-by: William Wadsworth <w.j.wadsworth@bath.ac.uk>
 2025-06-09 16:11:19 +01:00
Julian Stirling
0457978048 Update depedencies and changelog priort to v3.0.0-alpha1 release 
Closes #398
 2025-06-09 15:39:26 +01:00
Joe Knapper
ae2ec1864f Merge branch 'config-scan-dir' into 'v3' 
Add scan directory to json config

Closes #393

See merge request openflexure/openflexure-microscope-server!283
 2025-06-09 13:42:27 +00:00
Julian Stirling
80b6fd088d Merge branch 'reverse_csm_order' into 'v3' 
Swapped the order of CSM so y axis is completed first

See merge request openflexure/openflexure-microscope-server!285
 2025-06-09 13:39:06 +00:00
Chish36
7eed48ed26 Swapped the order of CSM so y axis is completed first 2025-06-09 13:39:06 +00:00
Julian Stirling
37960a4cc2 Merge branch 'Server-versioning' into 'v3' 
Use same version number for server and webapp, add CI check

Closes #382

See merge request openflexure/openflexure-microscope-server!286
 2025-06-09 12:32:41 +00:00
Julian Stirling
7fdb5f37ba Apply 4 suggestion(s) to 3 file(s) 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-09 12:08:25 +00:00
Julian Stirling
c79184a6d9 Use same version number for server and webapp, add CI check 
- Check webapp and server have same version number
- Use `genversion` on build to create javascript file with version string
from pyproject.toml
- Expose the version number in the js interface
- Correct format of current of alpha version string because javascript complains

Closes #382
 2025-06-09 12:13:15 +01:00
Julian Stirling
24b6eb74a1 Merge branch 'update-version-for-alpha1' into 'v3' 
Update labthings-api dep and also the version number for alpha release

See merge request openflexure/openflexure-microscope-server!284
 2025-06-06 13:38:19 +00:00
Julian Stirling
2aa7d0f6be Update labthings-api dep and also the version number for alpha release 2025-06-06 13:09:04 +01:00
Julian Stirling
60b2fda385 Merge branch 'custom-at' into 'v3' 
Custom `from_index()` function in webapp for backwards compatibility before javascrpt `at()`

Closes #396

See merge request openflexure/openflexure-microscope-server!280
 2025-06-06 12:00:05 +00:00
Julian Stirling
3a1c3bb026 Ensure server and config vars always defined before fallback server is started 2025-06-06 12:42:21 +01:00
Julian Stirling
b45f5651ab Add scan directory to json config 2025-06-06 12:21:51 +01:00
Joe Knapper
efb3b12819 Replace .at() in action button with custom .from_index() 2025-06-06 12:10:31 +01:00