rahix/openflexure-microscope-server
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683 commits

Author SHA1 Message Date
Julian Stirling
57b20782a0 Further fixes after introducing scan workflow selection 2026-01-16 13:04:23 +00:00
Julian Stirling
21b779a4a5 Dynamic UI for scan workflows 2026-01-16 12:18:54 +00:00
Julian Stirling
2a3a54b936 Get unit tests passing with Scan Workflows 2026-01-16 09:28:15 +00:00
Julian Stirling
c82523dd5b Start updating unit tests after refactoring into ScanWorkflows 2026-01-16 09:28:15 +00:00
Julian Stirling
11ef1217e0 Docstrings and tweaks of ScanWorflow refactor 2026-01-16 09:28:15 +00:00
Julian Stirling
c938560f00 Docstrings and final tweaks of ScanWorflow refactor 2026-01-15 21:59:53 +00:00
Julian Stirling
665622a802 First working interation of ScanWorkflows. Needs a tidy 2026-01-15 20:59:53 +00:00
Julian Stirling
adab5bae24 Start smart stack parameters in scan workflow 2026-01-15 16:05:02 +00:00
Julian Stirling
54ed78c832 Create aquisition routines for scan workflows, remove background detector from base ScanWorkflow class 2026-01-15 14:53:47 +00:00
Julian Stirling
b6343362b2 Start splitting ScanData into workflow specific data. 2026-01-15 12:59:06 +00:00
Julian Stirling
5ce74cad8a A start to implementing ScanWorkflow 2026-01-15 12:59:06 +00:00
Julian Stirling
ca46439269 Rename "active_detector" for background detecor. Improve thing selector coercion 2026-01-14 15:10:13 +00:00
Julian Stirling
6b97d2da44 Fix unit tests for background detectors as Things 2026-01-14 10:05:04 +00:00
Julian Stirling
3e8874188e Get UI working for background detector things 2026-01-14 10:05:04 +00:00
Julian Stirling
44860bf777 Continue turning background detectors back into Things 2026-01-14 10:05:04 +00:00
Julian Stirling
6a1ad573d9 Start turning background detectors back into things 2026-01-14 10:05:04 +00:00
Julian Stirling
0bba613a4b Apply suggestions from code review of branch fast-sim 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-01-13 11:45:32 +00:00
Julian Stirling
51d6bdb991 Fully generate simulation sample canvas before setting to class attribute 2026-01-13 11:34:49 +00:00
Julian Stirling
4c557612fb Apply suggestions from code review of branch fast-sim 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-01-12 17:41:51 +00:00
Julian Stirling
0abbd827fd Remove exception block from simulation that only silence errors and errors that are impossible to reach 2026-01-12 16:17:11 +00:00
Julian Stirling
8f52841f67 Add tests for new simulated camera poperites that update the canvas 2026-01-12 16:17:11 +00:00
Julian Stirling
fa89f24477 Type fixing for simulation camera 2026-01-12 16:17:11 +00:00
Julian Stirling
fc3ca8cbe7 Slightly increase glyph shape so that blob cannot touch edge 2026-01-12 16:17:10 +00:00
Julian Stirling
980af66548 Let lists of colours be set for simulation sample. 2026-01-12 16:17:10 +00:00
Julian Stirling
11379d8fa7 Allow colour to be set for simulation sample. 2026-01-12 16:17:10 +00:00
Julian Stirling
7b9f4aa202 Expose sample density and sample repeat for simulation camera to the UI in camera settings rather than as init options 2026-01-12 16:17:10 +00:00
Julian Stirling
159e2d14ab Unify canvas and sample shape for simulation, set flag for if repeating. 2026-01-12 16:17:10 +00:00
Julian Stirling
99f7802195 Create sprites upsampled, before downsampling so they hhave a smoother edge interpolation 2026-01-12 16:17:10 +00:00
Julian Stirling
fa249a0f24 Calculate simulation images downsampled for speed 2026-01-12 16:17:10 +00:00
Julian Stirling
06cab8a6a4 Use type[] not Type[] in typehints, and add clarification comment. 2026-01-12 15:28:10 +00:00
Julian Stirling
c1ad445517 Fix some final type issues in Autofocus 2026-01-09 15:18:06 +00:00
Julian Stirling
141ccc06c1 Some minor type fixes 2026-01-09 15:18:05 +00:00
Julian Stirling
58aa3df587 Fix a number of issues with camera_stage_mapping 2026-01-09 15:18:05 +00:00
Julian Stirling
7abede0db0 Fix type errors in remaining Things 2026-01-09 15:18:05 +00:00
Julian Stirling
99eee2e912 Fix camera type issues 2026-01-09 15:18:05 +00:00
Julian Stirling
9976c5cb84 Fix stage typehints 2026-01-09 15:18:05 +00:00
Julian Stirling
afeca2bbed Fix picamera tuning setting type 2026-01-09 15:18:05 +00:00
Julian Stirling
5df5651fc2 Adjust name for a number of propery/setting setters 2026-01-09 15:18:05 +00:00
Julian Stirling
26d395f05d Type fixes for system Thng 2026-01-09 15:18:04 +00:00
Julian Stirling
51512f36f7 Unify UI for action_button_for and property_control_for 2026-01-09 15:18:04 +00:00
Julian Stirling
afbc00acef Improve __enter__ typing for things 2026-01-09 15:18:04 +00:00
Julian Stirling
d52548cc13 Improve camera buffer typing 2026-01-09 15:18:04 +00:00
Julian Stirling
e0c63ab354 Unify camera capute signatures 2026-01-09 15:18:04 +00:00
Julian Stirling
dcf329f1c5 Fix typing in stage_measure 2026-01-09 15:18:04 +00:00
Julian Stirling
4060c06a2b Assorted type fixes 2026-01-09 15:18:04 +00:00
Julian Stirling
99f3d2d311 Start fixing some issues found by MyPy 2026-01-09 15:18:04 +00:00
Julian Stirling
4ad1fff656 Remove final dependencies 2025-12-17 15:52:03 +00:00
Julian Stirling
be5f9630ca A fond farewell to the last of the InvocationLoggers 2025-12-17 15:52:03 +00:00
Julian Stirling
510a44dd17 Remove all cancel hooks from smart scan and stitching 2025-12-17 14:04:37 +00:00
Julian Stirling
5b15e2d34c Fix camera stage mapping logging 2025-12-17 11:20:41 +00:00