jaknapper
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52b58241cc
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Added copy_sharpest_image to autofocus
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2025-06-23 11:19:23 +01:00 |
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jaknapper
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d39bcbaf5c
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Moved streaming changing to inner loop
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2025-06-23 11:19:23 +01:00 |
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jaknapper
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0d32983b62
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Only undershoot z stack if image count > 1, settle before first capture
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2025-06-23 11:19:23 +01:00 |
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jaknapper
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744ec28f93
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Get images as a PIL image from camera, use resizing and saving as settling time in stack
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2025-06-23 11:19:20 +01:00 |
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jaknapper
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dbed1c6971
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Default resize in stitching for scan tab stitching
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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9f2a131f1e
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Swap stream for scan, target_resolution as arg
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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f5c1ff2621
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Ruff formating
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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17f3bbe646
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Low res stream during scanning for instant high res captures
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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a9fdd0ea3e
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Wait params in captures, multiple attempts to capture
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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de7ffb9d1e
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Stream_name and capture_method args updated
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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8bc0573ab1
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Capture_array can now use "full" stream
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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9d1385231d
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Rename jpeg_array to highres_array
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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132efa8033
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Options for capture method, default downsampling of correlations
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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26163dc97e
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Added a new way to capture full res JPEGs, need to do a comparison of results
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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ab33de7ccd
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Capture a jpeg to disk
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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d8878e40da
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Stacking in autofocus with temp capture Thing
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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46458ca8a1
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Create a stack folder and copy the middle image to image_dir
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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a1784941fe
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Ruff formatting and removing all capturing from smart_scan
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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603b9c7d16
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Functional z stack Thing
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2025-06-23 11:17:45 +01:00 |
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Joe Knapper
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d1ed7ec797
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Apply suggestions from code review of branch fast-stack
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2025-06-20 11:26:58 +00:00 |
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Joe Knapper
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006d3b2a7b
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Apply suggestions from code review of branch fast-stack
Co-authored-by: Beth Probert <beth_probert@outlook.com>
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2025-06-20 11:23:14 +00:00 |
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jaknapper
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ce33b94aab
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Capture as a Raw dependency to use methods that aren't actions
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2025-06-20 12:19:07 +01:00 |
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jaknapper
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6cf2f4d8c3
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Typehints and docstrings in z_stack
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2025-06-19 14:58:16 +01:00 |
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jaknapper
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6acfbaefd6
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Split up z stack function
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2025-06-18 18:36:21 +01:00 |
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jaknapper
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e8c4103bb0
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Remove unneeded logging
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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f363ec0eff
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Docstring for test_stack
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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dbb65d55b5
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Use scan autofocus dz
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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cdd603d751
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Capture the full stack requested
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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0671f2d1be
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Backlash correction as global, more comments
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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712f524414
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Looping autofocus on failed smart stack
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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3e164102f6
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A stack that tests whether the sharpest image is towards the middle
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2025-06-17 14:34:42 +01:00 |
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Julian Stirling
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1c54d25212
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Add ruff checking for unnecessary comprehensions
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2025-06-10 16:07:49 +01:00 |
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Julian Stirling
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2050c2dc7c
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Add return checker, needed 4 fixes
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2025-06-10 16:07:48 +01:00 |
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Julian Stirling
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3f0564f253
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Turning on more lint checkers, warning for cameras that ignore resolution setting
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2025-06-10 16:07:48 +01:00 |
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Joe Knapper
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ae2ec1864f
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Merge branch 'config-scan-dir' into 'v3'
Add scan directory to json config
Closes #393
See merge request openflexure/openflexure-microscope-server!283
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2025-06-09 13:42:27 +00:00 |
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Chish36
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7eed48ed26
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Swapped the order of CSM so y axis is completed first
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2025-06-09 13:39:06 +00:00 |
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Julian Stirling
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b45f5651ab
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Add scan directory to json config
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2025-06-06 12:21:51 +01:00 |
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Joe Knapper
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08d1371569
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-06-06 10:25:34 +00:00 |
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Joe Knapper
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69db7b4041
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Apply 2 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-06-05 17:09:37 +00:00 |
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Joe Knapper
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41f6c8879a
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RATIO as a global, better naming and splitting of generate_image()
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2025-06-05 15:03:26 +01:00 |
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Joe Knapper
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2db895a1fc
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Defocus and realign simulation axes
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2025-06-05 12:09:01 +01:00 |
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jaknapper
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a499d9230c
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Switch to updated "preview stitch" mode in stitching
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2025-05-23 16:28:22 +01:00 |
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jaknapper
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cc3620d2ed
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Stitch with dzi by default, and check for dzi available in scans()
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2025-05-23 16:28:21 +01:00 |
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Julian Stirling
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fe1696df28
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Fix error in purge_empty_scans if the images dir hadn't been created
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2025-05-23 12:49:46 +01:00 |
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Julian Stirling
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70f4304b2e
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Fix bug where .jpg files are not counted in scan list (only .jpeg)
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2025-05-23 11:45:26 +01:00 |
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jaknapper
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b812c6be35
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Settling time as global, settle before taking first image in stack
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2025-05-21 15:41:49 +01:00 |
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Julian Stirling
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6332c8b647
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Merge branch 'openflexure-stitching-from-pip' into 'v3'
Import openflexure-stitching from pip
See merge request openflexure/openflexure-microscope-server!270
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2025-05-21 10:00:48 +00:00 |
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jaknapper
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44f2435ea4
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Removed stitching path as kwarg for scanning
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2025-05-21 10:30:42 +01:00 |
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Julian Stirling
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c793620fcd
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Merge branch 'cleanup_empty_scans' into 'v3'
Added purge_empty_scans() method
Closes #370
See merge request openflexure/openflexure-microscope-server!257
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2025-05-20 18:26:00 +00:00 |
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Joe Knapper
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6c8c8bf358
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-20 17:04:48 +00:00 |
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