Commit graph

4340 commits

Author SHA1 Message Date
Beth Probert
538f8ffe09 Update bug template to include table or configuration, more detail about how often the bug happens, confirming that the user has checked this is a new bug, and the difference in expected and current behaviour. 2026-03-06 16:31:40 +00:00
Julian Stirling
ba8de65fd2 Merge branch 'codespell-update' into 'v3'
Fix spellings found as codespell updates

See merge request openflexure/openflexure-microscope-server!526
2026-03-06 16:10:17 +00:00
Julian Stirling
011fc5a795 Fix spellings found as codespell updates 2026-03-06 15:06:53 +00:00
Julian Stirling
f7cb84bff5 Merge branch 'align-modal' into 'v3'
Align buttons in confirmation modal

Closes #709

See merge request openflexure/openflexure-microscope-server!525
2026-03-06 09:42:18 +00:00
Joe Knapper
76e80b299f Align buttons in confirmation modal 2026-03-05 16:36:10 +00:00
Joe Knapper
a988b726f5 Merge branch 'lower-target-brightness' into 'v3'
Decrease target brightness for both cameras as its pre-gamma

Closes #621

See merge request openflexure/openflexure-microscope-server!491
2026-03-05 10:59:07 +00:00
Julian Stirling
5fab6825e2 Update picamera tests 2026-03-04 22:47:01 +00:00
Joe Knapper
84f3032022 Update docstrings to explain lower brightness 2026-03-04 20:52:49 +00:00
jaknapper
e324014a81 Increase target exposure to 40% 2026-03-04 20:52:49 +00:00
Joe Knapper
75ca73f148 Decrease target brightness for both cameras as its pre-gamma 2026-03-04 20:52:49 +00:00
Julian Stirling
8dc7d1cb56 Merge branch 'data-directory' into 'v3'
Create and mount application level data directory rather than just a scan directory

Closes #595 and #697

See merge request openflexure/openflexure-microscope-server!503
2026-03-04 20:10:06 +00:00
Julian Stirling
a7a61971d3 Update picamera tests 2026-03-04 17:27:59 +00:00
Julian Stirling
3a9340f6e0 Update scan directory in webapp 2026-03-04 17:22:03 +00:00
Julian Stirling
ec27b7d5c5 Update integration tests for application_config 2026-03-04 17:22:03 +00:00
Julian Stirling
7e4ec53d78 Update how the application configuration is read for LabThings 0.0.17 2026-03-04 17:22:03 +00:00
Julian Stirling
45903f92a6 Create and mount application level data direcory rather than just a scan directory 2026-03-04 17:22:03 +00:00
Julian Stirling
2c2a52cb97 Merge branch 'metadata-testing' into 'v3'
Metadata testing

Closes #576 and #575

See merge request openflexure/openflexure-microscope-server!519
2026-03-04 17:19:02 +00:00
jaknapper
7ca94497c7 Remove link from basecamera docstring 2026-03-03 15:32:59 +00:00
jaknapper
9a6f80edf4 Update camera_test with extra key 2026-03-03 14:45:32 +00:00
jaknapper
3020ab59f4 Fix typing for gamma_curve 2026-03-03 14:21:28 +00:00
jaknapper
b716013ef2 Fixed tuning file gamma key to gamma_curve 2026-03-03 14:03:17 +00:00
jaknapper
0173cf912f Add gamma_curve to metadata 2026-03-03 13:59:43 +00:00
jaknapper
17f77e36c4 Picamera test 2026-03-03 13:33:34 +00:00
Joe Knapper
5019884175 Camera metadata includes subclass name, and test 2026-03-03 13:23:30 +00:00
Julian Stirling
ac9852a7ad Merge branch 'less-stack-coersion' into 'v3'
Do less coersion for stacks now labthings validates settings.

See merge request openflexure/openflexure-microscope-server!516
2026-03-03 10:02:05 +00:00
Julian Stirling
0fdcb9b623 Merge branch 'equal-offsets' into 'v3'
Allow histo scans with equal dx and dy

See merge request openflexure/openflexure-microscope-server!517
2026-03-02 22:56:53 +00:00
Julian Stirling
1dce732a9a Always log dx and dy steps for Histoscan 2026-03-02 20:53:16 +00:00
Joe Knapper
c09164a4e3 Apply suggestions from code review of branch equal-offsets
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2026-03-02 20:47:12 +00:00
Joe Knapper
7d3427ad2a Test equal overlaps 2026-03-02 19:31:04 +00:00
Joe Knapper
5a79e4ffd3 Allow histo scans with equal dx and dy 2026-03-02 19:24:20 +00:00
Julian Stirling
dc2bc77dbb Merge branch 'backlash-in-stage' into 'v3'
Backlash correction in base stage class

Closes #420

See merge request openflexure/openflexure-microscope-server!509
2026-03-02 19:10:46 +00:00
Julian Stirling
d7b4457a55 Do less coersion for stacks now labthings validates settings. 2026-03-02 18:19:11 +00:00
Joe Knapper
b57833b033 Merge branch 'event-names' into 'v3'
Change pointer event names for clarity

See merge request openflexure/openflexure-microscope-server!510
2026-03-02 14:54:56 +00:00
Julian Stirling
d4fbcb6d61 Apply suggestions from code review of branch backlash-in-stage
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2026-03-02 14:40:27 +00:00
Julian Stirling
9ab7e50773 Apply suggestions from code review of branch backlash-in-stage
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2026-03-02 14:40:27 +00:00
Julian Stirling
0527990282 Use backlash compensation in smart scan and autofocus 2026-03-02 14:40:25 +00:00
Julian Stirling
c12814f0eb Add a load more backlash corrected move test cases. 2026-03-02 14:37:21 +00:00
Julian Stirling
c2b784e606 Add stage backlash correction 2026-03-02 14:37:21 +00:00
Julian Stirling
35819aa826 Track the backlash state of stages 2026-03-02 14:37:21 +00:00
Julian Stirling
6f3cf00b36 Add a base stage method for update_position, splitting out hardware specifics 2026-03-02 14:37:21 +00:00
Julian Stirling
e443b1ac5b Merge branch 'more-dev-docs' into 'v3'
More developer documnetation

See merge request openflexure/openflexure-microscope-server!513
2026-03-02 13:36:18 +00:00
Julian Stirling
d33b67393e Merge branch 'headless-opencv' into 'v3'
Move to headless opencv

See merge request openflexure/openflexure-microscope-server!514
2026-03-02 13:35:42 +00:00
Julian Stirling
ae8285ed28 Merge branch 'opencv-camera-switcher' into 'v3'
Add functionality to switch OpenCV camera without restarting the server.

See merge request openflexure/openflexure-microscope-server!487
2026-03-02 13:25:12 +00:00
Julian Stirling
f425786912 Improve fonts in software diagram if Open Sans not installed 2026-03-02 13:10:17 +00:00
Joe Knapper
61e4c8d8d7 Apply suggestions from code review of branch opencv-camera-switcher
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2026-03-02 12:34:06 +00:00
Julian Stirling
2fee313d42 Apply suggestions from code review of branch opencv-camera-switcher 2026-03-02 11:24:32 +00:00
Julian Stirling
9e48f13d6f Apply suggestions from code review of branch opencv-camera-switcher
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2026-03-02 11:02:35 +00:00
Julian Stirling
5bd2fb18c5 Move to headless opencv 2026-03-01 22:29:28 +00:00
Julian Stirling
cdfa0b5846 Remove out of date maintainer docs 2026-03-01 12:50:21 +00:00
Julian Stirling
8d3965dcff Always build dev docs 2026-03-01 12:16:07 +00:00