rahix/openflexure-microscope-server
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions
589 commits 1 branch 0 tags 24 MiB
Commit graph

60 commits

Author SHA1 Message Date
Joel Collins
4e7606aa0c Blackened files 2019-11-06 22:07:16 +00:00
jtc42
e4a78046d7 Implemented draft of new background task system 2019-11-01 16:06:49 +00:00
Joel Collins
dc794d4df8 Microscope capture objects now just handle on-disk data 2019-09-16 16:35:32 +01:00
Joel Collins
5966ce29be Blackened everything 2019-09-15 14:17:52 +01:00
Joel Collins
6581385ab9 Refactored JsonPayload to JsonResponse 2019-09-13 18:04:33 +01:00
jtc42
4733b250ed Added support for a fully mocked device 2019-06-28 12:52:55 +01:00
Joel Collins
90e8bd6558 Converted to use new convenience imports 2019-06-24 14:40:07 +01:00
Joel Collins
085daa5ba6 Removed redundant test schema 2019-06-18 17:03:17 +01:00
Joel Collins
8a5c749d47 Added specific API schema example plugin 2019-06-17 17:35:20 +01:00
Joel Collins
559fe6c2fe Merge branch 'api-schema' of https://gitlab.com/openflexure/openflexure-microscope-server into api-schema 2019-06-17 13:55:25 +01:00
Joel Collins
9911b33621 Removed test schema 2019-06-17 13:55:14 +01:00
Joel Collins
456ca7d13d Added example schema 2019-06-17 13:55:05 +01:00
Joel Collins
e52871e21b Fixed default backlash 2019-06-17 13:54:32 +01:00
jtc42
5837d78a21 Add missing itertools import 2019-06-16 13:06:28 +01:00
Joel Collins
8742c4d43c Added extra content to test schema 2019-06-14 17:51:26 +01:00
Joel Collins
616ed455f5 Removed redundant payload 2019-06-14 17:18:54 +01:00
Joel Collins
7cb992adc4 Added example API schema 2019-06-14 17:17:34 +01:00
jtc42
8c3302644a Automatically add microscope ID and name to metadata 2019-06-07 17:28:57 +01:00
jtc42
235aa984f9 Updated docs 2019-06-07 13:37:20 +01:00
Joel Collins
70be245c2a Ensure stream recording at start of fast_up_down_up_autofocus 2019-05-30 10:43:46 +01:00
Joel Collins
5e34b998dd Fixed plugin calling old focus_rel method 2019-05-28 09:27:47 +01:00
Joel Collins
092181348b Load capture objects from files. Remove YAML database. 2019-05-15 16:32:58 +01:00
Joel Collins
941aadebfe Merge branch 'temporary-scan-captures' into 'master' 
Temporary scan captures

See merge request openflexure/openflexure-microscope-server!10
 2019-04-14 09:00:21 +00:00
Joel Collins
7cf54240be Temp capture folder now handled by camera 2019-04-11 07:13:32 +01:00
Joel Collins
a1965f606c Removed redundant z-stack import 2019-04-09 15:12:31 +01:00
Joel Collins
915958885b Added temporary support to scans 2019-04-09 14:57:28 +01:00
Richard Bowman
e90eb7c2d4 deleted old autofocus plugin 2019-04-08 22:40:50 +01:00
Richard Bowman
7aea6291c7 Refactored fast autofocus 
Tidied up the fast autofocus code, including moving the bulk of the
new code from the `scan` plugin into `autofocus` and updating it to
reflect the fact that the autofocus plugin now merges both old and
new functionality (i.e. fast_autofocus is no longer a separate
plugin).  Also fixed a bug that caused it to overshoot on scans.
 2019-04-08 19:56:29 +01:00
Richard Bowman
7e83d724b8 Added fast autofocus integrated with Z stacking in the scan code 2019-04-08 16:12:31 +01:00
Joel Collins
24ded8de32 Restructured fast autofocus into main autofocus plugin 2019-04-08 15:09:36 +03:00
Joel Collins
edc5e7c241 Fixed malformed JSONIFY task responses 2019-04-08 08:10:57 +01:00
Richard Bowman
ef3aeb0581 Added fast autofocus 2019-04-07 19:58:08 +01:00
Richard Bowman
bb8312835a Auto-calibrate now correctly freezes settings 2019-04-04 17:04:38 +01:00
Joel Collins
f30d48e59d Added brief wait before z-stack captures 2019-03-29 17:32:57 +00:00
Joel Collins
b5c0acb705 Improved scan argument parsing 2019-03-29 16:17:24 +00:00
Joel Collins
980e64397d Improved scan metadata 2019-03-28 17:34:50 +00:00
Joel Collins
6237762309 Combined stack and tile scans 2019-03-28 14:18:14 +00:00
Joel Collins
89ea6a69de Fixed imports, and PEP8 styling 2019-03-07 10:58:08 +00:00
Joel Collins
298bc2ba6a Added scan API routes 2019-03-07 09:54:43 +00:00
Joel Collins
d10263adf8 Added arg to affix metadata and tags to scans 2019-03-07 09:53:25 +00:00
Joel Collins
cd4bab94ab Renamed stack plugin to scan 2019-03-06 21:08:56 +00:00
Joel Collins
4d82b4df8a Initial tile/stack plugin 2019-03-06 17:04:32 +00:00
Richard Bowman
0520f058ad Explicitly set ISO=0 (auto) when adjusting gain. 2019-02-05 18:42:50 +00:00
Joel Collins
0948c9308a Went on a PEP-8 rampage 2019-01-31 17:20:46 +00:00
Joel Collins
036fb82628 Moved calibration plugin to defaults. Save config when calibration finishes. 2019-01-31 16:46:34 +00:00
Joel Collins
4450ee132e Moved autofocus plugin to its own module 2019-01-30 13:51:20 +00:00
Joel Collins
d7e19c40e2 Included Richards autofocus plugin in defaults 2019-01-29 13:54:47 +00:00
Joel Collins
465ed647d3 Fixed docstrings 2019-01-24 16:24:14 +00:00
Joel Collins
9860ace394 Fixed broken legacy import 2019-01-24 14:09:47 +00:00
Joel Collins
95a3abde7e Restructured builtin plugins and docstrings 2018-12-20 15:44:43 +00:00