rahix/openflexure-microscope-server
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270 commits

Author SHA1 Message Date
Julian Stirling
45903f92a6 Create and mount application level data direcory rather than just a scan directory 2026-03-04 17:22:03 +00:00
Julian Stirling
0527990282 Use backlash compensation in smart scan and autofocus 2026-03-02 14:40:25 +00:00
Julian Stirling
c2b784e606 Add stage backlash correction 2026-03-02 14:37:21 +00:00
Julian Stirling
fbdea68ab7 Capture logs when scanning 2026-02-23 11:35:03 +00:00
Joe Knapper
3beb8e1147 Auto-populate workflow dropdown 2026-02-09 18:48:49 +00:00
Julian Stirling
8f30f08bdf Apply suggestions from code review of branch scan-workflows 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-02-06 13:28:30 +00:00
Julian Stirling
b26dda60a4 More tests and assoicated bugfixes 2026-01-18 23:19:44 +01:00
Julian Stirling
eb93342d9f Add test of logic for selecting worflow. 2026-01-18 14:23:18 +00:00
Julian Stirling
57b20782a0 Further fixes after introducing scan workflow selection 2026-01-16 13:04:23 +00:00
Julian Stirling
21b779a4a5 Dynamic UI for scan workflows 2026-01-16 12:18:54 +00:00
Julian Stirling
c82523dd5b Start updating unit tests after refactoring into ScanWorkflows 2026-01-16 09:28:15 +00:00
Julian Stirling
11ef1217e0 Docstrings and tweaks of ScanWorflow refactor 2026-01-16 09:28:15 +00:00
Julian Stirling
c938560f00 Docstrings and final tweaks of ScanWorflow refactor 2026-01-15 21:59:53 +00:00
Julian Stirling
665622a802 First working interation of ScanWorkflows. Needs a tidy 2026-01-15 20:59:53 +00:00
Julian Stirling
adab5bae24 Start smart stack parameters in scan workflow 2026-01-15 16:05:02 +00:00
Julian Stirling
54ed78c832 Create aquisition routines for scan workflows, remove background detector from base ScanWorkflow class 2026-01-15 14:53:47 +00:00
Julian Stirling
b6343362b2 Start splitting ScanData into workflow specific data. 2026-01-15 12:59:06 +00:00
Julian Stirling
5ce74cad8a A start to implementing ScanWorkflow 2026-01-15 12:59:06 +00:00
Julian Stirling
ca46439269 Rename "active_detector" for background detecor. Improve thing selector coercion 2026-01-14 15:10:13 +00:00
Julian Stirling
3e8874188e Get UI working for background detector things 2026-01-14 10:05:04 +00:00
Julian Stirling
58aa3df587 Fix a number of issues with camera_stage_mapping 2026-01-09 15:18:05 +00:00
Julian Stirling
4060c06a2b Assorted type fixes 2026-01-09 15:18:04 +00:00
Julian Stirling
99f3d2d311 Start fixing some issues found by MyPy 2026-01-09 15:18:04 +00:00
Julian Stirling
4ad1fff656 Remove final dependencies 2025-12-17 15:52:03 +00:00
Julian Stirling
be5f9630ca A fond farewell to the last of the InvocationLoggers 2025-12-17 15:52:03 +00:00
Julian Stirling
510a44dd17 Remove all cancel hooks from smart scan and stitching 2025-12-17 14:04:37 +00:00
Julian Stirling
e1dfceb0bd Remove one final invocation logger dep from autofocus 2025-12-17 11:20:41 +00:00
Julian Stirling
9ef417971f Remove a load more /names/ 2025-12-14 18:23:33 +00:00
Julian Stirling
c318fddf89 Update fastapi_endpoint to endpoint 2025-12-14 18:23:33 +00:00
Julian Stirling
5d3aa71b4f Update things to have thing_server_interface, and further fixes to properties 2025-12-14 18:23:27 +00:00
Julian Stirling
5eea78cac7 update action, property, and setting syntax for labthings-fastapi 0.0.12 2025-12-14 18:23:26 +00:00
Julian Stirling
7bc4c514a6 Autofix import order 2025-12-02 16:26:15 +00:00
Julian Stirling
dabb195b08 Ensure smart stack exits and saves on failure only if check background is false 2025-12-02 09:57:24 +00:00
Julian Stirling
ff70e44858 Don't read json data of ongoing scans 2025-11-04 18:50:17 +00:00
Julian Stirling
46e9070a33 Rename ScanListData to ScanListInfo as it containts ScanInfo not ScanData objects 2025-11-04 18:50:17 +00:00
jaknapper
c2d8160ff4 Smart Scan metadata containing scan name if scan is running 2025-10-23 10:40:56 +01:00
Joe Knapper
fa6fdb1a67 Stack parameter coercion in create_stack_params 
Co-authored with Julian Stirling
 2025-10-09 14:23:47 +01:00
jaknapper
18e49ba50c Test stack params at start of scan main loop 2025-10-09 14:22:37 +01:00
Julian Stirling
4345f8c336 Merge branch 'tweak-scan-list' into 'v3' 
Scan list improvements

Closes #391

See merge request openflexure/openflexure-microscope-server!397
 2025-09-29 08:55:13 +00:00
Julian Stirling
14cc3f9fcf Fix error trying to purge empty scans if current scan has no images 
Closes #563
 2025-09-25 15:12:34 +01:00
Julian Stirling
cd6bcd196f Don't show buttons for ongoing scans. 2025-09-19 18:29:34 +01:00
Julian Stirling
6b1e40f689 Add flake8-simplicity rules 2025-09-18 16:21:45 +01:00
Julian Stirling
2ce49088e7 Add return typehints to magic methods 2025-08-27 18:56:09 +01:00
Julian Stirling
4c46330959 Add ANN20X rules to ruff 2025-08-27 18:56:08 +01:00
Julian Stirling
24233412af Start adding ANN ruff rules 2025-08-27 18:54:15 +01:00
Julian Stirling
6fa4e4dc64 Add a grab_as_array camera method that grabs from the stream but catches broken jpegs and retries 2025-08-21 13:35:21 +01:00
Joe Knapper
bd115e0023 Change all CameraDeps to CameraClients 2025-08-15 10:16:36 +00:00
Julian Stirling
05644456e0 Allow preview to cancel! 2025-08-12 16:41:55 +01:00
Julian Stirling
cd311f08bf Update stiching to differentiate bwtween stitchers that use a thread and those that block 2025-08-06 17:47:33 +01:00
Julian Stirling
5f092835ac Apply suggestions from code review of branch yet-another-smart-scan-refactor 2025-08-06 17:27:26 +01:00