jaknapper
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bf6437b42c
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Renaming z_stack features for clarity, docstring on AutofocusThing
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2025-05-07 19:52:20 +01:00 |
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jaknapper
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9f39f61d03
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Stacking in autofocus with temp capture Thing
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2025-05-07 19:52:18 +01:00 |
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jaknapper
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dee11deec1
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New capturing Thing
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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9b2ccea660
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Don't move further after the final image of the stack
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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ade713b6d0
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Create a stack folder and copy the middle image to image_dir
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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0b7a817674
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Ruff formatting and removing all capturing from smart_scan
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2025-05-07 19:51:55 +01:00 |
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jaknapper
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1f3211e3ee
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Functional z stack Thing
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2025-05-07 19:49:52 +01:00 |
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Joe Knapper
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fe5db1a0f5
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Merge branch 'image_count' into 'v3'
Regex to count captured images
Closes #306
See merge request openflexure/openflexure-microscope-server!253
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2025-05-07 13:53:37 +00:00 |
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Joe Knapper
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88f72caed5
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Merge branch 'thumbnails-in-scan-tab' into 'v3'
Thumbnails and accurate durations in scan-list tab
See merge request openflexure/openflexure-microscope-server!250
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2025-05-07 13:53:34 +00:00 |
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jaknapper
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f5265b262e
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Regex as global
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2025-05-07 11:26:49 +01:00 |
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jaknapper
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30ff796833
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Regex to count captured images
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2025-05-07 11:09:29 +01:00 |
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Joe Knapper
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a1be3e518f
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Apply 2 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-01 14:14:34 +00:00 |
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jaknapper
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fbbb3decdc
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Ruff formatting
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2025-05-01 13:16:48 +00:00 |
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jaknapper
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b8ddab1ed8
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Remove correlation only stitching, now covered by preview stitch
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2025-05-01 13:16:48 +00:00 |
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jaknapper
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5ca4c824aa
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Remove producing thumbnail (to be added to stitching repo)
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2025-04-23 14:28:41 +01:00 |
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Julian Stirling
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3adc34c30b
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Merge branch 'dont-test-focus-change' into 'v3'
Remove focus_change_acceptable test
Closes #342
See merge request openflexure/openflexure-microscope-server!249
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2025-04-23 11:28:05 +00:00 |
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Joe Knapper
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c4dc357cf3
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-04-23 10:57:56 +00:00 |
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Joe Knapper
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283a10c560
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Always move back to expected focus after failed autofocus
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2025-04-23 09:15:54 +00:00 |
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Julian Stirling
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0ac455bf89
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Merge branch 'autofocus-at-start' into 'v3'
Looping autofocus at the start of the scan
See merge request openflexure/openflexure-microscope-server!247
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2025-04-23 08:10:21 +00:00 |
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jaknapper
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91057f164a
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Thumbnails and accurate durations in scan-list tab
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2025-04-22 19:02:29 +01:00 |
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jaknapper
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3bcc71304e
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Fixed focused path tracking, move to estimated focus before autofocus
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2025-04-22 14:33:27 +01:00 |
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jaknapper
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7cb1a3980e
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Remove focus_change_acceptable test, autofocus from centre
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2025-04-17 17:20:40 +01:00 |
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jaknapper
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5d8a1073b2
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Remove focus_change_acceptable
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2025-04-17 17:02:39 +01:00 |
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Joe Knapper
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07cbef0536
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Reimplement tie breaking by distance between
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2025-04-17 10:25:40 +01:00 |
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jaknapper
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c895383a83
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Remove repeated moves_from_centre() code
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2025-04-17 10:12:12 +01:00 |
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Joe Knapper
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1248c2b7c8
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Remove unneeded third sort key
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2025-04-17 08:47:24 +00:00 |
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jaknapper
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2741123cf9
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Looping autofocus at the start of the scan
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2025-04-16 18:47:47 +01:00 |
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Joe Knapper
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b414697cfb
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Update testing for multiple sample shapes
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2025-04-15 16:35:52 +01:00 |
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jaknapper
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7373424fcf
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Ruff formatting
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2025-04-15 10:40:45 +01:00 |
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jaknapper
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ec25ae7126
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Add a scan path planner that prioritises shorter moves
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2025-04-14 18:49:35 +01:00 |
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Julian Stirling
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06632f195e
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Spelling corrections and docstring improvements
Co-authored by Joe Knapper <jaknapper@hotmail.com>
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2025-04-14 15:46:27 +00:00 |
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Julian Stirling
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7f46bc2d9b
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Fixing capture_thread variable and autofocus logic
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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a0b6dbdfce
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Add weay to access a copy of the data from a ScanPlanner
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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91073535a8
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More tests for scan planners
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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842e196f9b
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Add some basic tests, and do minor fixes based on tests and MyPy
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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1f66e8bc7a
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Enormous refactor of the scan code, was hard to find an intermediate working place to commit
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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cddb49c9f7
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Clean up code as I remove bare excepts
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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2c171026be
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Still tidying the start end end of the scan code
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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797f3bcb60
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Collecting scan parameters into dictionary that will become a dataclass
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2025-04-14 11:27:25 +01:00 |
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Julian Stirling
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7665d45e09
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Make the coverage report touch all files
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2025-04-11 23:29:32 +01:00 |
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Julian Stirling
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1c871749b0
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Remove module level noqa from background detect.
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2025-04-11 12:32:32 +01:00 |
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Julian Stirling
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4eeff35e2d
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Fixes to naming to make basic lint checks pass
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2025-04-11 12:29:14 +01:00 |
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Julian Stirling
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b7c472bb24
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fix comment on number of zeros padding the scan name
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2025-04-10 22:39:22 +01:00 |
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Julian Stirling
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31c768c12a
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Move @_scan_running decorator out of class and tidy as suggested in review
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2025-04-10 22:14:56 +01:00 |
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Julian Stirling
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e030eb576b
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Add @scan_running decorator for scans to try to access to the scan logger for methods not called by the scan
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2025-04-10 17:52:12 +01:00 |
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Julian Stirling
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26e265f026
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Fixes from review (mostly spellings)
Co authored by:
* Joe Knapper <jaknapper@hotmail.com>
* Beth Probert <beth_probert@outlook.com>
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2025-04-10 16:35:49 +00:00 |
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Julian Stirling
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840c527cc2
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Remove unused Stitching Thing
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2025-04-10 13:53:51 +01:00 |
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Julian Stirling
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a5d55c95b8
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Further tidying of scan directory variables
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2025-04-10 13:24:11 +01:00 |
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Julian Stirling
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90cfce146d
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Fix default scan name
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2025-04-10 11:46:16 +01:00 |
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Julian Stirling
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040373ef88
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Run check background aonly fter scan variables are stored
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2025-04-10 11:45:57 +01:00 |
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