Joe Knapper
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1e368aef81
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Apply suggestions from code review of branch log-oom-error
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-08-14 14:09:54 +01:00 |
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jaknapper
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4d32152427
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Custom Memory error changed to generic sigkill
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2025-08-07 18:10:02 +01:00 |
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jaknapper
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feec53aa1f
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Custom out of memory error
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2025-08-07 17:56:34 +01:00 |
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Julian Stirling
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bc103f8cdf
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Merge branch 'yet-another-smart-scan-refactor' into 'v3'
Break up SmartScan further so it can be tested
Closes #482 and #311
See merge request openflexure/openflexure-microscope-server!342
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2025-08-07 15:03:52 +00:00 |
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Julian Stirling
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dbdf254154
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Fix CLI arg for FinalStitcher, and a docstring typo.
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2025-08-07 15:20:14 +01:00 |
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Julian Stirling
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5caae613dc
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Apply suggestions from code review of branch yet-another-smart-scan-refactor
Co-authored-by: Beth Probert <beth_probert@outlook.com>
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2025-08-07 13:55:47 +00:00 |
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Julian Stirling
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7727d0a51d
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Update language in BaseStitcher to clarify that the stitching uses subprocess not threading
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2025-08-07 12:06:58 +01:00 |
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Julian Stirling
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cd311f08bf
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Update stiching to differentiate bwtween stitchers that use a thread and those that block
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2025-08-06 17:47:33 +01:00 |
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Julian Stirling
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5f092835ac
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Apply suggestions from code review of branch yet-another-smart-scan-refactor
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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2e6ba73345
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Apply suggestions from code review of branch yet-another-smart-scan-refactor
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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6739a84d7c
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Apply suggestions from code review of branch yet-another-smart-scan-refactor
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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f9fcdf628b
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Squash final todos for SmartScan refactor
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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7d83aadf8d
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Squash some TODOs
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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4e9b07c78f
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Consolidate information into ScanData, remove ad-hoc differences for specific error in _run_scan
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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82691a6b78
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Tweak error reporting in _run_scan and add a lot more testing for _run_scan
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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d7a7ac4c7d
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More complete testing of code that runs stitching subprocess.
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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cf74ea1351
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More complete testing of code that runs stitching subprocess.
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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7569c7d6b2
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Add validation checks to prevent arbitrary code execution via stitching.
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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a632ddee92
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Add unit tests for generated stitching commands.
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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573fc20dec
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Add new tests new scan directory function and for scan data serialisation
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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6ceb1a9845
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Pull stitching out of SmartScanThing
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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f449bcdd78
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Turn scan_data into a BaseModel with validation for custom formatting
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2025-08-06 17:27:26 +01:00 |
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Julian Stirling
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d80d08dd83
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Merge branch 'pull-webapp' into 'v3'
Pull webapp
Closes #512
See merge request openflexure/openflexure-microscope-server!347
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2025-08-06 16:11:01 +00:00 |
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Julian Stirling
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73beb2b09d
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Merge branch 'fix-movements' into 'v3'
Fix movements axes
Closes #498
See merge request openflexure/openflexure-microscope-server!338
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2025-08-06 15:50:08 +00:00 |
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Julian Stirling
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ac98205391
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Apply suggestions from code review of branch pull-webapp
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-08-06 15:27:02 +00:00 |
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jaknapper
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2f21fd6200
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Describe expected behaviour in stage settings
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2025-08-06 15:57:00 +01:00 |
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Julian Stirling
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7a241f30a1
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Update developer guidance in README
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2025-08-06 15:05:33 +01:00 |
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Julian Stirling
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25e41dbff4
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Add script to pull webapp from CI artifacts
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2025-08-06 15:04:11 +01:00 |
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jaknapper
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772a4c4301
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Remove z key invert option
More space between invert options and Zero button
Rename Step Size to Keyboard Step Size
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2025-08-06 14:21:49 +01:00 |
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Julian Stirling
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0921a73a81
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Merge branch 'simulation-scanning' into 'v3'
Scanning in simulation
Closes #395
See merge request openflexure/openflexure-microscope-server!344
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2025-08-06 13:11:14 +00:00 |
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Julian Stirling
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b672c3c2a7
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Clarify docstring for Simulation start_streaming
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2025-08-06 13:24:25 +01:00 |
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jaknapper
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5edf15ca7a
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Action button to invert z axis in stage coordinates
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2025-08-06 12:15:39 +01:00 |
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Julian Stirling
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beb534272e
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Merge branch 'thread_safe_scan_directory_manager' into 'v3'
Make scan directory manager thread safe
Closes #506
See merge request openflexure/openflexure-microscope-server!346
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2025-08-05 22:54:52 +00:00 |
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Julian Stirling
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ad739e4830
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Update integration test as iamge size for simulation camera changed.
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2025-08-05 23:52:20 +01:00 |
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Julian Stirling
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480af1d938
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Update picamera_coverage.zip as camera source changed
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2025-08-05 23:21:42 +01:00 |
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Julian Stirling
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cbd2f9e0e3
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Add check that _lock is a lock in requires_lock
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2025-08-05 23:13:11 +01:00 |
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Julian Stirling
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9be9097246
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Make scan directory manager thread safe
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2025-08-05 23:13:11 +01:00 |
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Joe Knapper
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c7dd269c01
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Apply suggestions from code review of branch fix-movements
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-08-05 13:09:59 +00:00 |
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Joe Knapper
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4b4256aefe
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Merge branch 'background_detect_configure' into 'v3'
Change "settings" to "configure" in background detect tab
Closes #487
See merge request openflexure/openflexure-microscope-server!345
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2025-08-05 10:58:28 +00:00 |
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Chish36
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3d07e990fd
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Change "settings" to "configure" in background detect tab
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2025-08-05 08:52:19 +01:00 |
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Julian Stirling
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f3c8add398
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Make axis inversion robust agains UI sending positions as strings
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2025-08-05 08:30:54 +01:00 |
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Julian Stirling
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4eca6c3f54
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Fix docstring formatting
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2025-08-05 08:30:54 +01:00 |
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Julian Stirling
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dacf219ea1
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Change from axis direction set by ints to set by bools. Add a lot more tests.
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2025-08-05 08:30:54 +01:00 |
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Julian Stirling
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58e3b5dcbd
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Start adding stage test and apply fixes to base class
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2025-08-05 08:30:54 +01:00 |
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Julian Stirling
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7e5a455b75
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Complete refactor so that child stages only work in hardware reference frame and BaseStage handles conversion
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2025-08-05 08:30:54 +01:00 |
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Julian Stirling
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b373931c1a
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Start to refactor into having an internal and external coordinates for stages to handle inversion
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2025-08-05 08:30:54 +01:00 |
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jaknapper
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ee9362ce48
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Invert x by default
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2025-08-05 08:30:54 +01:00 |
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jaknapper
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35fbef67e4
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axis direction server setting and action to invert each axis
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2025-08-05 08:30:54 +01:00 |
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jaknapper
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591d085359
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Realign and document key presses in GUI
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2025-08-05 08:30:54 +01:00 |
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Julian Stirling
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8ce06991f9
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Small tweaks to simulation camera to get scanning working.
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2025-08-05 08:28:10 +01:00 |
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