rahix/openflexure-microscope-server
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions
3096 commits 1 branch 0 tags 24 MiB
Commit graph

3096 commits

This branch
This branch
All branches
Author SHA1 Message Date
Julian Stirling
16dfe9073f Merge branch 'do-not-overwrite-globals' into 'v3' 
Remove the overwriting of internal globals, requires removing future annoations

Closes #347

See merge request openflexure/openflexure-microscope-server!303
 2025-06-24 10:55:43 +00:00
Julian Stirling
be07966631 Remove the overwriting of internal globals, requires removing future annoations 2025-06-24 10:18:30 +01:00
Joe Knapper
7435d15b65 Merge branch 'Bug-template-typo' into 'v3' 
Correct spelling of Sangaboard

See merge request openflexure/openflexure-microscope-server!302
 2025-06-23 16:12:25 +00:00
Joe Knapper
c6682f539d Correct spelling of Sangaboard 2025-06-23 15:37:16 +00:00
Julian Stirling
9f19434f58 Merge branch 'html-coverge-report' into 'v3' 
Automatically create HTML coverage report each time PyTest runs

See merge request openflexure/openflexure-microscope-server!300
 2025-06-23 11:14:18 +00:00
Julian Stirling
c70b487a1f Automatically create HTML coverage report each time PyTest runs 2025-06-23 11:00:10 +01:00
Joe Knapper
4c72098536 Merge branch 'shutdown-timeout' into 'v3' 
Add a timeout when shutting down the server.

See merge request openflexure/openflexure-microscope-server!297
 2025-06-20 16:35:37 +00:00
Joe Knapper
cc506b8794 Merge branch 'simulation-axes' into 'v3' 
Git ignore openflexure/ dir

See merge request openflexure/openflexure-microscope-server!298
 2025-06-20 16:32:37 +00:00
Joe Knapper
9dac080566 Fixed merge conflict 2025-06-20 15:14:35 +00:00
Joe Knapper
b05e3bee63 added openflexure/ to .gitignore 2025-06-20 16:11:07 +01:00
Julian Stirling
cdf23bc403 Add a timeout when shutting down the server. 
The browser needs to be closed for graceful shutdown. If the browser
is left open the microscope may never shut down as it is waiting on
the uvicorn process to finish. This causes potential SD card issues.

This forces the server to force shutdown if it doesn't exit gracefully in
2 seconds.
 2025-06-19 16:25:43 -04:00
Joe Knapper
b01032be99 Merge branch 'update-issue-templates' into 'v3' 
Update issue templates

See merge request openflexure/openflexure-microscope-server!295
 2025-06-17 16:23:43 +00:00
Julian Stirling
dd24a3863d Apply suggestions from code review of branch update-issue-templates 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2025-06-17 15:58:45 +00:00
Julian Stirling
f7545c6d8d Update issue templates 2025-06-17 11:18:33 -04:00
Julian Stirling
67e8b19603 Merge branch 'remove-nav-spinners-firefox' into 'v3' 
Remove numerical input spinners for x,y,z settings in Firefox

See merge request openflexure/openflexure-microscope-server!288
 2025-06-16 12:15:42 +00:00
Julian Stirling
c43b7cb8b4 Merge branch 'more-checkers' into 'v3' 
Enable more lint checkers

See merge request openflexure/openflexure-microscope-server!290
 2025-06-12 11:56:29 +00:00
Julian Stirling
37bb9635ad Apply 2 suggestion(s) to 2 file(s) 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-12 10:29:54 +00:00
Julian Stirling
3019e13c80 Add commented out code check to linters 2025-06-11 23:40:49 +01:00
Julian Stirling
86dad84a5a Merge branch 'correct-alpha-version-changelog' into 'v3' 
Correct version name in change beta1 -> alpha1

See merge request openflexure/openflexure-microscope-server!291
 2025-06-11 12:50:12 +00:00
Julian Stirling
fe26a299d5 Correct version name in change beta1 -> alpha1 2025-06-11 10:08:16 +00:00
Julian Stirling
04832892cc Chnge docstring tester from Doc to D as Doc has no effect 2025-06-10 16:07:49 +01:00
Julian Stirling
1c54d25212 Add ruff checking for unnecessary comprehensions 2025-06-10 16:07:49 +01:00
Julian Stirling
2050c2dc7c Add return checker, needed 4 fixes 2025-06-10 16:07:48 +01:00
Julian Stirling
3f0564f253 Turning on more lint checkers, warning for cameras that ignore resolution setting 2025-06-10 16:07:48 +01:00
Julian Stirling
cf80120572 Remove numerical input spinners for x,y,z settings in Firefox 
Chrome/Safari/Edge etc are all set already by the
`.numeric-setting-line-input::-webkit-outer-spin-button`
and
`.numeric-setting-line-input::-webkit-inner-spin-button`

but firefox needs a different line set on the input itself see:
https://www.w3schools.com/howto/howto_css_hide_arrow_number.asp
 2025-06-10 08:47:23 +01:00
Julian Stirling
6c6356bf38 Merge branch 'final-changes-for-v3.0.0-alpha1' into 'v3' 
Update depedencies and changelog prior to v3.0.0-alpha1 release

Closes #398

See merge request openflexure/openflexure-microscope-server!287
 2025-06-09 15:38:56 +00:00
Julian Stirling
e223405444 Tweak changelog and add MR list 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
Co-authored-by: William Wadsworth <w.j.wadsworth@bath.ac.uk>
 2025-06-09 16:11:19 +01:00
Julian Stirling
0457978048 Update depedencies and changelog priort to v3.0.0-alpha1 release 
Closes #398
 2025-06-09 15:39:26 +01:00
Joe Knapper
ae2ec1864f Merge branch 'config-scan-dir' into 'v3' 
Add scan directory to json config

Closes #393

See merge request openflexure/openflexure-microscope-server!283
 2025-06-09 13:42:27 +00:00
Julian Stirling
80b6fd088d Merge branch 'reverse_csm_order' into 'v3' 
Swapped the order of CSM so y axis is completed first

See merge request openflexure/openflexure-microscope-server!285
 2025-06-09 13:39:06 +00:00
Chish36
7eed48ed26 Swapped the order of CSM so y axis is completed first 2025-06-09 13:39:06 +00:00
Julian Stirling
37960a4cc2 Merge branch 'Server-versioning' into 'v3' 
Use same version number for server and webapp, add CI check

Closes #382

See merge request openflexure/openflexure-microscope-server!286
 2025-06-09 12:32:41 +00:00
Julian Stirling
7fdb5f37ba Apply 4 suggestion(s) to 3 file(s) 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-09 12:08:25 +00:00
Julian Stirling
c79184a6d9 Use same version number for server and webapp, add CI check 
- Check webapp and server have same version number
- Use `genversion` on build to create javascript file with version string
from pyproject.toml
- Expose the version number in the js interface
- Correct format of current of alpha version string because javascript complains

Closes #382
 2025-06-09 12:13:15 +01:00
Julian Stirling
24b6eb74a1 Merge branch 'update-version-for-alpha1' into 'v3' 
Update labthings-api dep and also the version number for alpha release

See merge request openflexure/openflexure-microscope-server!284
 2025-06-06 13:38:19 +00:00
Julian Stirling
2aa7d0f6be Update labthings-api dep and also the version number for alpha release 2025-06-06 13:09:04 +01:00
Julian Stirling
60b2fda385 Merge branch 'custom-at' into 'v3' 
Custom `from_index()` function in webapp for backwards compatibility before javascrpt `at()`

Closes #396

See merge request openflexure/openflexure-microscope-server!280
 2025-06-06 12:00:05 +00:00
Julian Stirling
3a1c3bb026 Ensure server and config vars always defined before fallback server is started 2025-06-06 12:42:21 +01:00
Julian Stirling
b45f5651ab Add scan directory to json config 2025-06-06 12:21:51 +01:00
Joe Knapper
efb3b12819 Replace .at() in action button with custom .from_index() 2025-06-06 12:10:31 +01:00
Joe Knapper
13c63f8481 Merge branch 'simulation-axes' into 'v3' 
Defocus and realign simulation axes

See merge request openflexure/openflexure-microscope-server!282
 2025-06-06 10:46:29 +00:00
Julian Stirling
ef246c1b03 Merge branch 'build-with-node-18' into 'v3' 
Change from building with node 15  to node 18

See merge request openflexure/openflexure-microscope-server!281
 2025-06-06 10:41:11 +00:00
Joe Knapper
08d1371569 Apply 1 suggestion(s) to 1 file(s) 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-06-06 10:25:34 +00:00
Julian Stirling
3c47f98727 Clarify webapp README section on dev server ports. 2025-06-06 10:16:12 +00:00
Julian Stirling
41c91ea712 Apply 2 suggestion(s) to 1 file(s) 
Co-authored-by: William Wadsworth <w.j.wadsworth@bath.ac.uk>
 2025-06-06 08:54:55 +00:00
Joe Knapper
69db7b4041 Apply 2 suggestion(s) to 1 file(s) 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-06-05 17:09:37 +00:00
Joe Knapper
41f6c8879a RATIO as a global, better naming and splitting of generate_image() 2025-06-05 15:03:26 +01:00
Julian Stirling
e0d61f3b87 De-duplicate npm build instructions 2025-06-05 12:27:22 +01:00
Julian Stirling
deeb164f29 Change from building with node 15 (end of life 2021) to node 18 (just gone EOL, but used on the Pi) 2025-06-05 11:16:53 +00:00
Joe Knapper
2db895a1fc Defocus and realign simulation axes 2025-06-05 12:09:01 +01:00