openflexure-microscope-server/openflexure_microscope/utilities.py
2019-11-19 19:19:54 +00:00

104 lines
3.1 KiB
Python

import re
import copy
import operator
from collections import abc
from functools import reduce
from contextlib import contextmanager
def camel_to_snake(name):
s1 = re.sub('(.)([A-Z][a-z]+)', r'\1_\2', name)
return re.sub('([a-z0-9])([A-Z])', r'\1_\2', s1).lower()
def camel_to_spine(name):
s1 = re.sub('(.)([A-Z][a-z]+)', r'\1-\2', name)
return re.sub('([a-z0-9])([A-Z])', r'\1-\2', s1).lower()
@contextmanager
def set_properties(obj, **kwargs):
"""A context manager to set, then reset, certain properties of an object.
The first argument is the object, subsequent keyword arguments are properties
of said object, which are set initially, then reset to their previous values.
"""
saved_properties = {}
for k in kwargs.keys():
try:
saved_properties[k] = getattr(obj, k)
except AttributeError:
print(
"Warning: could not get {} on {}. This property will not be restored!".format(
k, obj
)
)
for k, v in kwargs.items():
setattr(obj, k, v)
try:
yield
finally:
for k, v in saved_properties.items():
setattr(obj, k, v)
def axes_to_array(
coordinate_dictionary, axis_keys=("x", "y", "z"), base_array=None, asint=True
):
"""Takes key-value pairs of a JSON value, and maps onto an array"""
# If no base array is given
if not base_array:
# Create an array of zeros
base_array = [0] * len(axis_keys)
else:
# Create a copy of the passed base_array
base_array = copy.copy(base_array)
# Do the mapping
for axis, key in enumerate(axis_keys):
if key in coordinate_dictionary:
base_array[axis] = (
int(coordinate_dictionary[key]) if asint else coordinate_dictionary[key]
)
return base_array
def filter_dict(dictionary: dict, keys: list):
# Get value by recursively applying getitem
val = reduce(operator.getitem, keys, dictionary)
# Create new dictionary by running reduce on key, val pairs
out = reduce(lambda x, y: {y: x}, reversed(keys), val)
return out
def entry_by_id(entry_id: str, object_list: list):
"""Return an object from a list, if <object>.id matches id argument."""
found = None
for o in object_list:
if o.id == entry_id:
found = o
return found
def recursively_apply(data, func):
"""
Recursively apply a function to a dictionary, list, array, or tuple
Args:
data: Input iterable data
func: Function to apply to all non-iterable values
"""
# If the object is a dictionary
if isinstance(data, abc.Mapping):
return {key: recursively_apply(val, func) for key, val in data.items()}
# If the object is iterable but NOT a dictionary or a string
elif (
isinstance(data, abc.Iterable)
and not isinstance(data, abc.Mapping)
and not isinstance(data, str)
):
return [recursively_apply(x, func) for x in data]
# if the object is neither a map nor iterable
else:
return func(data)