openflexure-microscope-server/openflexure_microscope/camera/capture.py
2018-11-20 13:56:51 +00:00

255 lines
8 KiB
Python

import uuid
import io
import os
import datetime
import copy
import logging
from PIL import Image
pil_formats = ['JPG', 'JPEG', 'PNG', 'TIF', 'TIFF']
thumbnail_size = (60, 60)
class StreamObject(object):
"""
StreamObject used to store and process capture data, and metadata.
"""
def __init__(
self,
write_to_file: bool=None,
keep_on_disk: bool=True,
filename: str=None,
folder: str=None,
fmt: str='file') -> None:
"""Create a new StreamObject, to manage capture data."""
# Store a nice ID
self.id = uuid.uuid4().hex
logging.info("Created {}".format(self.id))
# Store file format
self.format = fmt
# Create file name. Default to UUID
if not filename:
filename = self.id
self.build_file_path(filename, folder, fmt)
# Byte stream properties
self.stream = io.BytesIO() # Byte stream that data will be written to
# Set default write target
self.write_to_file = write_to_file
if self.write_to_file is False:
logging.debug("Target for {} set to 'stream'".format(self.id))
self.target = self.stream
else:
logging.debug("Target for {} set to 'file'".format(self.id))
self.target = self.file
# Keep on disk after close by default
self.keep_on_disk = keep_on_disk
# Log if created by context manager
self.context_manager = False
# Object lock
self.locked = False
# Thumbnail (populated only for JPEG captures)
self.thumb_bytes = None
def __enter__(self):
"""Create StreamObject in context, to auto-clean disk data."""
logging.debug("Entering context for {}.\
Stored files will be cleaned up automatically.".format(self.id))
self.keep_on_disk = False # Flag file to be removed on close.
self.context_manager = True # Used in metadata
return self
def __exit__(self, *args):
"""Exit StreamObject, and auto-clean disk data."""
logging.info("Cleaning up {}".format(self.id))
self.close()
def build_file_path(
self,
filename: str,
folder: str,
fmt: str):
"""
Construct a full file path, based on filename, folder, and file format.
Defaults to datestamp.
"""
file_name = "{}.{}".format(filename, fmt)
# Create folder and file
if folder:
if not os.path.exists(folder):
os.mkdir(folder)
file_path = os.path.join(folder, file_name)
else:
file_path = file_name
self.basename = filename
self.file = file_path
self.filename = file_name
def lock(self):
"""Set locked flag to True."""
self.locked = True
def unlock(self):
"""Set locked flag to False."""
self.locked = False
@property
def stream_exists(self, auto_rewind=True) -> bool:
"""Check if BytesIO stream is empty."""
if auto_rewind:
self.stream.seek(0) # Rewind the data bytes for reading
if self.stream.getvalue(): # If data stream contains data
self.stream.seek(0) # Rewind the data bytes for reading
return True
else:
self.stream.seek(0) # Rewind the data bytes for reading
return False
@property
def file_exists(self) -> bool:
"""Check if corresponding file exists."""
if os.path.isfile(self.file):
return True
else:
return False
@property
def metadata(self) -> dict:
"""Return dictionary of StreamObject properties."""
d = {
'id': self.id,
'locked': self.locked,
'keep_on_disk': self.keep_on_disk,
'filename': self.filename,
'path': self.file,
}
# Check stream
if self.stream_exists:
d['stream'] = True
else:
d['stream'] = False
# Combined availability of data
if self.stream_exists or self.file_exists:
d['available'] = True
else:
d['available'] = False
# Check if file was manually deleted
if self.keep_on_disk and not self.file_exists:
d['path'] = "{} (Deleted)".format(d['path'])
return d
@property
def data(self) -> io.BytesIO:
"""Return a byte string of the capture data."""
self.stream.seek(0) # Rewind the data bytes for reading
if self.stream_exists: # If data stream contains data
# Create a copy of the stream bytes
data = io.BytesIO(self.stream.getbuffer())
else: # If data stream is empty
if self.file_exists: # If data file exists
# TODO: Streamline this bit
logging.info("Opening from file {}".format(self.file))
with open(self.file, 'rb') as f:
d = io.BytesIO(f.read()) # Load bytes from file
d.seek(0) # Rewind loaded stream
# Create a copy of the stream bytes
data = io.BytesIO(d.getbuffer())
else:
data = None
return data # Read and return bytes data
@property
def binary(self) -> bytes:
"""Return a byte string of the capture data."""
return self.data.getvalue()
@property
def thumbnail(self) -> io.BytesIO:
# If no thumbnail exists, try and make one
if not self.thumb_bytes:
print("Building thumbnail")
if self.format.upper() in pil_formats:
im = Image.open(self.data)
im.thumbnail(thumbnail_size)
self.thumb_bytes = io.BytesIO()
im.save(self.thumb_bytes, self.format)
self.thumb_bytes.seek(0)
else:
self.thumb_bytes.seek(0)
# Copy the buffer, to avoid closing the file
data = io.BytesIO(self.thumb_bytes.getbuffer())
return data
def load_file(self) -> bool:
"""Load data stored on disk to the in-memory stream."""
if self.file_exists: # If data file exists
# TODO: Streamline this bit
with open(self.file, 'rb') as f:
self.stream = io.BytesIO(f.read()) # Load bytes from file
self.stream.seek(0) # Rewind data bytes again
return True
else:
return False
def save_file(self) -> bool:
"""Write the StreamObjects stream to a file."""
if self.stream_exists: # If there's a stream to save
with open(self.file, 'ab') as f: # Load file as bytes
logging.debug("Writing stream to file {}".format(self.file))
f.seek(0, 0) # Seek to the start of the file
f.write(self.binary) # Write data bytes to file
return True
else:
return False
def delete_stream(self):
"""Clear the BytesIO stream of the StreamObject."""
self.stream = io.BytesIO()
def delete_file(self) -> bool:
"""If the StreamObject has been saved, delete the file."""
if os.path.isfile(self.file):
logging.info("Deleting file {}".format(self.file))
os.remove(self.file)
return True
else:
return False
def delete(self):
"""Entirely delete all capture data."""
logging.info("Deleting {}".format(self.id))
self.delete_stream()
self.delete_file()
def shunt(self):
"""Demote the StreamObject from being stored in memory."""
if not self.file_exists: # If file doesn't already exist
self.save_file() # Save stream to disk, if it exists
self.delete_stream() # Delete the stream from memory
def close(self):
"""Both clear the stream, and delete any associated on-disk data."""
logging.info("Closing {}".format(self.id))
self.delete_stream()
if not self.keep_on_disk:
self.delete_file()