98 lines
3.1 KiB
Python
98 lines
3.1 KiB
Python
import json
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import os
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import tempfile
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from fastapi.testclient import TestClient
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from PIL import Image
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import numpy as np
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import piexif
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import pytest
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import labthings_fastapi as lt
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from openflexure_microscope_server.things.camera.simulation import SimulatedCamera
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from openflexure_microscope_server.things.stage.dummy import DummyStage
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from openflexure_microscope_server.things.autofocus import AutofocusThing
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from openflexure_microscope_server.things.camera_stage_mapping import CameraStageMapper
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from openflexure_microscope_server.things import camera_stage_mapping
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camera_stage_mapping.DEFAULT_SETTLING_TIME = 0 # skip the settling time for tests
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@pytest.fixture
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def thing_server():
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temp_folder = tempfile.TemporaryDirectory()
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server = lt.ThingServer(settings_folder=temp_folder.name)
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server.add_thing(
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SimulatedCamera(
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shape=(240, 320, 3), canvas_shape=(960, 1240, 3), frame_interval=0.01
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),
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"/camera/",
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)
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server.add_thing(DummyStage(step_time=0.000001), "/stage/")
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server.add_thing(AutofocusThing(), "/autofocus/")
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server.add_thing(CameraStageMapper(), "/camera_stage_mapping/")
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assert os.path.exists(os.path.join(temp_folder.name, "camera/"))
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# NB yield is important: otherwise, the temp folder gets deleted before the test runs
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yield server
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@pytest.fixture
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def client(thing_server):
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with TestClient(thing_server.app) as client:
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yield client
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@pytest.fixture
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def slower_client(thing_server):
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thing_server.things["/stage/"].step_time = 0.0001
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with TestClient(thing_server.app) as client:
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yield client
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def test_autofocus(slower_client):
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client = slower_client
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autofocus = lt.ThingClient.from_url("/autofocus/", client)
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_ = autofocus.fast_autofocus()
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def test_grab_jpeg(client):
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camera = lt.ThingClient.from_url("/camera/", client)
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blob = camera.grab_jpeg()
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_image = Image.open(blob.open())
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def test_capture_jpeg_metadata(client):
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camera = lt.ThingClient.from_url("/camera/", client)
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blob = camera.capture_jpeg()
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image = Image.open(blob.open())
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exif_dict = piexif.load(image.info["exif"])
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encoded_metadata = exif_dict["Exif"][piexif.ExifIFD.UserComment]
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metadata = json.loads(encoded_metadata)
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assert "position" in metadata["/stage/"]
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def test_stage(client):
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stage = lt.ThingClient.from_url("/stage/", client)
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start = stage.position
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move = {"x": 1, "y": 2, "z": 3}
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stage.move_relative(**move)
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pos = stage.position
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for s, m, p in zip(start.values(), move.values(), pos.values()):
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assert s + m == p
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stage.move_relative(**{k: -v for k, v in move.items()})
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pos = stage.position
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for s, p in zip(start.values(), pos.values()):
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assert s == p
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def test_capture_array(client):
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camera = lt.ThingClient.from_url("/camera/", client)
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array = np.asarray(camera.capture_array())
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assert array.shape == (240, 320, 3)
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# Currently this fails, not yet sure why.
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def test_camera_stage_mapping_calibration(client):
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camera_stage_mapping = lt.ThingClient.from_url("/camera_stage_mapping/", client)
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camera_stage_mapping.calibrate_xy()
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