openflexure-microscope-server/scripts/zenodo/zenodo.py
2025-07-10 09:24:50 +01:00

98 lines
3.4 KiB
Python

"""A script for packaging data for Zenodo.
Copyright (c) 2020 Bath Open Instrumentation Group
Adapted from: https://gitlab.com/schlauch/zenodo-api-test/
Copyright (c) 2018 German Aerospace Center (DLR). All rights reserved.
SPDX-License-Identifier: MIT-DLR
"""
import json
import os
import requests
class Zenodo:
def __init__(self, api_token, use_sandbox=True):
self._api_token = api_token
self._use_sandbox = use_sandbox
if use_sandbox:
self.zenodo_url = "https://sandbox.zenodo.org/api/deposit/depositions"
else:
self.zenodo_url = "https://zenodo.org/api/deposit/depositions"
def create_new_deposit(self):
"""Create a new (unpublished) Zenodo deposit and return its deposition ID."""
headers = {"Content-Type": "application/json"}
r = requests.post(
self.zenodo_url,
params={"access_token": self._api_token},
json={},
headers=headers,
)
print(r.status_code)
print(r.json())
return r.json()
def set_metadata(self, deposition_id, metadata):
"""Set the given metadata for the specified deposit."""
headers = {"Content-Type": "application/json"}
r = requests.put(
self.zenodo_url + "/{}".format(deposition_id),
params={"access_token": self._api_token},
data=json.dumps({"metadata": metadata}),
headers=headers,
)
print(r.status_code)
print(r.json())
def upload_file(self, deposition_id, file_path):
"""Upload a new file for the given deposit."""
file_name = os.path.basename(file_path)
data = {"filename": file_name}
files = {"file": open(file_path, "rb")}
r = requests.post(
self.zenodo_url + "/{}/files".format(deposition_id),
params={"access_token": self._api_token},
data=data,
files=files,
)
print(r.status_code)
print(r.json())
def publish_deposit(self, deposition_id):
"""Publish the given deposit. BEWARE: It is now visible to all!!!"""
r = requests.post(
self.zenodo_url + "/{}/actions/publish".format(deposition_id),
params={"access_token": self._api_token},
)
print(r.status_code)
print(r.json())
def create_new_version(self, deposition_id):
"""Create a new version of an already published deposit."""
r = requests.post(
self.zenodo_url + "/{}/actions/newversion".format(deposition_id),
params={"access_token": self._api_token},
)
print(r.status_code)
print(r.json())
return os.path.basename(r.json()["links"]["latest_draft"])
def remove_all_files(self, deposition_id):
"""Remove all uploaded files of a unpublished deposit."""
r = requests.get(
self.zenodo_url + "/{}/files".format(deposition_id),
params={"access_token": self._api_token},
)
print(r.status_code)
print(r.json())
for file_entry in r.json():
print("Remove file entry: " + file_entry["id"])
print(
requests.delete(
self.zenodo_url
+ "/{}/files/{}".format(deposition_id, file_entry["id"]),
params={"access_token": self._api_token},
)
)