87 lines
No EOL
3 KiB
Python
87 lines
No EOL
3 KiB
Python
import numpy as np
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from openflexure_microscope.api.v1.views import MicroscopeViewPlugin
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from openflexure_microscope.api.utilities import JsonPayload
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from flask import request, jsonify, abort
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class TileScanAPI(MicroscopeViewPlugin):
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def post(self):
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payload = JsonPayload(request)
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# Get params
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name = payload.param('name')
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step_size = payload.param('step_size', default=[2000, 1500], convert=list)
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grid = payload.param('grid', default=[3, 3], convert=list)
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autofocus_dz = payload.param('autofocus_dz', default=20, convert=int)
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use_video_port = payload.param('use_video_port', default=False, convert=bool)
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resize = payload.param('size', default=None)
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if resize:
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if ('width' in resize) and ('height' in resize):
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resize = (int(resize['width']), int(resize['height'])) # Convert dict to tuple
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else:
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abort(404)
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bayer = payload.param('bayer', default=True, convert=bool)
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metadata = payload.param('metadata', default={}, convert=dict)
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tags = payload.param('tags', default=[], convert=list)
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print("Running tile scan...")
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task = self.microscope.task.start(
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self.plugin.tile,
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basename = name,
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step_size = step_size,
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grid = grid,
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autofocus_dz = autofocus_dz,
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use_video_port = use_video_port,
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resize = resize,
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bayer = bayer,
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metadata = metadata,
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tags = tags
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)
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# return a handle on the autofocus task
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return jsonify(task.state, 202)
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class ZStackAPI(MicroscopeViewPlugin):
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def post(self):
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payload = JsonPayload(request)
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# Get params
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name = payload.param('name')
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step_size = payload.param('step_size', default=[2000, 1500], convert=list)
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steps = payload.param('steps', default=5, convert=int)
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center = payload.param('center', default=True, convert=bool)
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use_video_port = payload.param('use_video_port', default=False, convert=bool)
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resize = payload.param('size', default=None)
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if resize:
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if ('width' in resize) and ('height' in resize):
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resize = (int(resize['width']), int(resize['height'])) # Convert dict to tuple
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else:
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abort(404)
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bayer = payload.param('bayer', default=True, convert=bool)
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metadata = payload.param('metadata', default={}, convert=dict)
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tags = payload.param('tags', default=[], convert=list)
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print("Running tile scan...")
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task = self.microscope.task.start(
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self.plugin.stack,
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basename = name,
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step_size = step_size,
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steps = steps,
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center = center,
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use_video_port = use_video_port,
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resize = resize,
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bayer = bayer,
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metadata = metadata,
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tags = tags
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)
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# return a handle on the autofocus task
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return jsonify(task.state, 202) |