openflexure-microscope-server/ofm_config_simulation.json
Joe Knapper f230eef2dc New scan workflow for snake scans, move next pos into scan baseclass
Update tests that were testing wrong method, update all to new select_nearby_focus_site
2026-02-09 13:19:10 +00:00

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JSON

{
"things": {
"camera": "openflexure_microscope_server.things.camera.simulation:SimulatedCamera",
"stage": "openflexure_microscope_server.things.stage.dummy:DummyStage",
"autofocus": "openflexure_microscope_server.things.autofocus:AutofocusThing",
"camera_stage_mapping": "openflexure_microscope_server.things.camera_stage_mapping:CameraStageMapper",
"system": "openflexure_microscope_server.things.system:OpenFlexureSystem",
"smart_scan": {
"class": "openflexure_microscope_server.things.smart_scan:SmartScanThing",
"kwargs": {
"scans_folder": "./openflexure/scans/",
"default_workflow": "histo_scan_workflow"
}
},
"histo_scan_workflow": "openflexure_microscope_server.things.scan_workflows:HistoScanWorkflow",
"snake_workflow": "openflexure_microscope_server.things.scan_workflows:SnakeWorkflow",
"bg_color_channels_luv": "openflexure_microscope_server.things.background_detect:ColourChannelDetectLUV",
"bg_channel_deviations_luv": "openflexure_microscope_server.things.background_detect:ChannelDeviationLUV"
},
"settings_folder": "./openflexure/settings/",
"log_folder": "./openflexure/logs/"
}