#!/usr/bin/env python import time import atexit import logging import sys import os from flask import Flask, jsonify, send_file, url_for from serial import SerialException from datetime import datetime from flask_cors import CORS from openflexure_microscope.api.exceptions import JSONExceptionHandler from openflexure_microscope.api.utilities import list_routes from openflexure_microscope.config import settings_file_path, JSONEncoder from openflexure_microscope.api import v2 from openflexure_microscope.common.labthings.labthing import LabThing from openflexure_microscope.common.labthings.find import registered_plugins from openflexure_microscope.common.labthings.plugins import find_plugins from openflexure_microscope.config import USER_PLUGINS_PATH from openflexure_microscope.api.microscope import default_microscope as api_microscope # Handle logging is_gunicorn = "gunicorn" in os.environ.get("SERVER_SOFTWARE", "") DEFAULT_LOGFILE = settings_file_path("openflexure_microscope.log") if (__name__ == "__main__") or (not is_gunicorn): # If imported, but not by gunicorn print("Letting sys handle logs") logger = logging.getLogger() logger.setLevel(logging.DEBUG) else: # Direct standard Python logging to file and console root = logging.getLogger() error_formatter = logging.Formatter( "[%(asctime)s] [%(threadName)s] [%(levelname)s] %(message)s" ) rotating_logfile = logging.handlers.RotatingFileHandler( DEFAULT_LOGFILE, maxBytes=1_000_000, backupCount=7 ) error_handlers = [rotating_logfile, logging.StreamHandler()] for handler in error_handlers: handler.setFormatter(error_formatter) root.addHandler(handler) root.setLevel(logging.getLogger("gunicorn.error").level) # Generate API URI based on version from filename def uri(suffix, api_version, base=None): if not base: base = "/api/{}".format(api_version) return_uri = base + suffix logging.debug("Created app route: {}".format(return_uri)) return return_uri # Create flask app app = Flask(__name__) app.url_map.strict_slashes = False # Use custom JSON encoder app.json_encoder = JSONEncoder # Enable CORS everywhere CORS(app, resources=r"*") # Make errors more API friendly handler = JSONExceptionHandler(app) # Attach lab devices labthing = LabThing(app, prefix="/api/v2") labthing.description = "Test LabThing-based API for OpenFlexure Microscope" labthing.register_device(api_microscope, "openflexure_microscope") for _plugin in find_plugins(USER_PLUGINS_PATH): labthing.register_plugin(_plugin) from openflexure_microscope.api.v2.views.captures import add_captures_to_labthing add_captures_to_labthing(labthing, prefix="") from openflexure_microscope.api.v2.views.state import add_states_to_labthing add_states_to_labthing(labthing, prefix="") from openflexure_microscope.api.v2.views.tasks import add_tasks_to_labthing add_tasks_to_labthing(labthing, prefix="") from openflexure_microscope.api.v2.views.streams import add_streams_to_labthing add_streams_to_labthing(labthing, prefix="") from openflexure_microscope.api.v2.views.actions import add_actions_to_labthing add_actions_to_labthing(labthing) @app.route("/routes") def routes(): """ List of all connected API routes .. :quickref: Global; Routes :>header Accept: application/json :>header Content-Type: application/json :status 200: stream active """ return jsonify(list_routes(app)) @app.route("/props") def props(): p = {} for key, prop in labthing.properties.items(): p[key] = {} p[key]["view"] = prop p[key]["url"] = labthing.url_for(prop, _external=True) return jsonify(p) @app.route("/ac") def actions(): p = {} for key, prop in labthing.actions.items(): p[key] = {} p[key]["view"] = prop p[key]["url"] = labthing.url_for(prop, _external=True) return jsonify(p) @app.route("/log") def err_log(): """ Most recent 1mb of log output .. :quickref: Global; Log :>header Accept: application/json :>header Content-Type: application/json :status 200: stream active """ timestamp = datetime.now().strftime("%Y-%m-%d_%H-%M-%S") return send_file( DEFAULT_LOGFILE, as_attachment=True, attachment_filename="openflexure_microscope_{}.log".format(timestamp), ) # Automatically clean up microscope at exit def cleanup(): global api_microscope logging.debug("App teardown started...") logging.debug("Settling...") time.sleep(0.5) # Save config logging.debug("Saving config for teardown...") api_microscope.save_settings() logging.debug("Settling...") time.sleep(0.5) # Close down the microscope logging.debug("Closing devices...") api_microscope.close() logging.debug("Settling...") time.sleep(0.5) logging.debug("App teardown complete.") atexit.register(cleanup) if __name__ == "__main__": app.run(host="0.0.0.0", port="5000", threaded=True, debug=True, use_reloader=False)