[project]
name = "openflexure-microscope-server"

# Note that version needs to match a string stored in a unit test, and
# the package.json file in the webapp or the CI will fail.
version = "3.0.0-alpha4"
authors = [
  { name="Richard Bowman", email="richard.bowman@cantab.net" },
  { name="Joel Collins" },
  { name="Julian Stirling" },
]
description = "Back-end code for the OpenFlexure Microscope"
readme = "README.md"
requires-python = ">=3.11"
classifiers = [
  "Programming Language :: Python :: 3",
  "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
  "Operating System :: OS Independent",
]
dependencies = [
  "labthings-fastapi==0.0.17",
  "sangaboard",
  "camera-stage-mapping ~= 0.1.10",
  "opencv-python-headless ~= 4.13.0",
  "openflexure-stitching[libvips]==0.2.3",
  "pillow ~= 10.4",
  "anyio ~= 4.0",
  "numpy ~= 2.2",
  "scipy ~=1.14",
  "piexif",
  "pydantic ~= 2.10.6",
  "simplejpeg >= 1.8.2",
  "semver ~= 3.0",
]

[project.optional-dependencies]
dev = [
  "ruff~=0.15.1",
  "mypy[reports]",
  "pytest",
  "pytest-cov",
  "pytest-mock==3.14",
  "matplotlib~=3.10",
  "hypothesis",
  "pydoctor~=25.4",
  "codespell~=2.4",
  "python-gitlab~=6.2"
]
pi = [
  "picamera2~=0.3.27",
]
manual = [
  "cv2-enumerate-cameras~=1.3.3",
]

[project.scripts]
openflexure-microscope-server = "openflexure_microscope_server.server:serve_from_cli"


[project.urls]
"Homepage" = "https://openflexure.org/"
"Bug Tracker" = "https://gitlab.com/openflexure/openflexure-microscope-server/-/issues"
"Source" = "https://gitlab.com/openflexure/openflexure-microscope-server/"

[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

# The [tool.poetry] metadata has been removed from this file, because 
# we have switched to Pipenv for dependency management and setuptools
# for the build system.  All metadata has been moved either to
# Pipfile or setup.py.
# The one key that doesn't map over nicely is the exclusion of 
# the node_modules folder, i.e. the line below:
#exclude = ["**/node_modules/"] # I've tried to put this in the "packages" key but not sure it works.
# I have left it here in case we ever switch back to Poetry, but I 
# don't believe it's critical at present, because we don't use 
# the Python package - we distribute a tarball directly.

[tool.mypy]
plugins = ["pydantic.mypy"]

[tool.ruff]
target-version = "py311"

[tool.pytest.ini_options]
addopts = [
    "--import-mode=importlib",
    "--cov=openflexure_microscope_server",
    "--cov-report=term",
    "--cov-report=xml:coverage.xml",
    "--cov-report=html:htmlcov",
    "--junitxml=report.xml",
]

norecursedirs = [".git", "build", "node_modules"]
pythonpath = ["."]
testpaths = ["tests/unit_tests"]

[tool.ruff.format]
# Use native line endings for all files
line-ending = "native"

[tool.ruff.lint]
select = [
    "E", # pycodestyle errors
    "W", #pycodestyle warnings
    "F", # PyFlakes
    "PL", # Pylint (a subset of, catches far less than pylint does)
    "B", # Flake8 bugbear
    "A", # Flake8 builtins checker
    "C", # Flake8 comprehensions
    "FIX", #TODO/FIXME's in code. These should be added during development for ongoing tasks.
           # If they are not fixed before merge they should be converted to GitLab issues
    "LOG", # Flake8 logging issues (pedantic logger formatting issues can be added with "G")
    "T20", # Warns for print statements, production code should log
    "PT", # pytest linting
    "RET", # Consistent clear return statements
    "RSE", # Raise parentheses
    "SIM", # Simplifications detected
    "ARG", # unused arguments
    "C90", # McCabe complexity!
    "NPY", # Numpy linting
    "N", # PEP8 naming
    "D", # Docstring checks
    "ERA001", # Commented out code!
    "S101",# No asserts!
    "ANN", # Type annotations
    "I", # Import sorting
]

ignore = [
    "E501", # Ignore long lines for now
    "D203",  # incompatible with D204
    "D213",  # incompatible with D212
    "D400",  # A stricter version of #415 that doesn't allow !
    "ANN401", # Disalows Any, Any is needed at times, Once MyPy is running Any will be
              # handled appropriately
    "PLR2004", # Ignore magic values in comparison for now. It doesn't seem we can set
               # allowed magic values and a number of our magic values are not really
               # magic (such as 255 when doing uint8 maths)
    "SIM105", # Not enforcing use of `contextlib.suppress(NotConnectedToServerError)`
              # instead of `try`-`except`-`pass`
]

[tool.ruff.lint.per-file-ignores]
# All testing dirs
"{tests}/**" = [
    "B018", # Complaining about useless attribute access in tests, but we need them to check errors are raised
    "ANN", # Tests are not typehinted for fixtures etc
    "S101", # Allow asserts in tests
    "T20", # Allow prints in tests
    "LOG015", # Allow tests to use the root logger.
    "PLC0415", # Allow tests to import later as this is needed for mocking
]
# Developer CLI scripts
"{pull_webapp,picamera_tests,change_log_helper}.py" = [
    "T20", # Printing is normal in small CLI scripts
]

[tool.ruff.lint.pydocstyle]
# This lets the D401 checker understand that decorated thing properties and thing
# settings act like properties so should be documented as such.
property-decorators = ["labthings_fastapi.property", "labthings_fastapi.setting"]

[tool.ruff.lint.pylint]
max-args = 7
max-positional-args = 5


[tool.ruff.lint.isort]
section-order = ["future", "standard-library", "third-party", "ours", "first-party", "local-folder"]

[tool.ruff.lint.isort.sections]
ours = [
    "camera_stage_mapping",
    "openflexure_stitching",
    "sangaboard",
    "labthings_fastapi",
]