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1233 commits

Author SHA1 Message Date
Richard Bowman
ecc861a06e Merge branch 'glyg-master-patch-10249' into 'master' 
Fix small typo, fixes #243

Closes #243

See merge request openflexure/openflexure-microscope-server!148
 2022-01-17 11:45:34 +00:00
Richard Bowman
164cf43277 Merge branch 'settling_times' into 'master' 
Added measure_settling_time function to autofocus

See merge request openflexure/openflexure-microscope-server!149
 2022-01-17 11:45:31 +00:00
Richard Bowman
1339c23757 Bump some logging statements to DEBUG 
Any action that takes captures ends up with
a log that's full of capture write operations,
because each new capture generates 6-10
messages.

I'm moving said messages to DEBUG because I
don't think they are important any more, and
they do clutter up the log.
 2022-01-13 14:56:18 +00:00
Richard Bowman
23bf3410f3 Code formatting fixes from black 2022-01-13 14:47:38 +00:00
Joe Knapper
2d494b41d9 Added docstring for measure_settling_time and hold 2022-01-11 15:46:15 +00:00
Joe Knapper
ecbdd8a5bf Added measure_settling_time function to autofocus 2021-12-01 13:09:32 +00:00
Guillaume Gay
046c28db97 Fix small typo, fixes #243 2021-11-26 11:07:59 +00:00
Kaspar Emanuel
13f7252dd7 Move Vue app to a js directory 2021-09-16 15:13:17 +01:00
Richard Bowman
515bee1422 Merge branch 'check-error-in-task-submitter-response' into 'master' 
Move error handling for taskSubmitter

See merge request openflexure/openflexure-microscope-server!138
 2021-09-07 14:57:25 +00:00
Richard
3d33218072 Move error handling for taskSubmitter 
taskSubmitter ended up in a confused state if the initial POST request
encountered an error.
I've updated `startPolling` to return a Promise, and moved the
error handling code to the top level.

This doesn't change anything for the case where we get a non-error
response to the POST request, but means that e.g. 400 errors
get caught and displayed properly.
 2021-08-26 23:12:47 +01:00
Richard
ae96340d79 Remove unused import 2021-08-23 20:53:04 +01:00
Richard Bowman
6a484514a9 Remove vestigial error handling code 
LabThings now handles HTTPErrors properly, so I am removing
this copy-pasted workaround.
 2021-08-23 16:08:50 +01:00
Richard Bowman
3e02fe4790 Merge branch 'static-docs' into 'master' 
Improved API docs

See merge request openflexure/openflexure-microscope-server!133
 2021-08-17 11:33:40 +00:00
Richard Bowman
040d7d4ba6 Fix action wrapper 
The action wrapper was using an unbound function - it
now passes the extension object as self.

We were incorrectly passing endpoint names as positional arguments -
this is fixed and I now use a keyword argument.
 2021-08-17 12:11:20 +01:00
Richard
b7c15886e9 Use neater spread operator to copy objects 
Rather than Object.assign, I now use the ... operator to
ensure that dictionaries don't pollute each other in computed
properties.
 2021-08-09 21:57:52 +01:00
Richard
332ecad19b Update caniuse-lite 2021-08-02 10:31:07 +01:00
Richard
3cdfd52a77 Added controls for smart stack 2021-07-25 09:14:33 +01:00
Richard
9fa545f3fa Typing fix 
mypy doesn't like adding attributes to functions, so
I have used the described_operation decorator to
add type hints to the functions.
 2021-07-25 03:38:20 +01:00
Richard
a8b1efb7cd Removed openapi endpoints (now in LabThings) 2021-07-25 01:23:44 +01:00
Richard
7b54abc210 blackened 2021-07-19 22:22:58 +01:00
Richard
34af06b1d1 Document route parameter in nested dictionaries 2021-07-19 22:21:39 +01:00
Richard
ec992c083f Describe filename param in capture download 2021-07-19 21:40:28 +01:00
Richard
36be07b276 Responses and parameters for zipbuilder 2021-07-19 21:32:08 +01:00
Richard
ba0f78df84 fix typing in autofocus 
I have an Optional dz, which is then
populated with a default if it's None.
I've added an explicit cast() to explain this to mypy.
 2021-07-19 21:18:25 +01:00
Richard
72f3c11fdd linting and typing fixes 2021-07-19 20:29:13 +01:00
Richard
b7c9d3b73b Sorted remaining content_type issues and blackened 2021-07-19 20:09:09 +01:00
Richard
38fbe530d2 Fix externalDocs entries 
My externalDocs entries in the "tags" metadata section
of the OpenAPI description were not valid.
This is now fixed.
 2021-07-19 11:56:40 +01:00
Richard
077d6fdc4b Added OpenAPI validation from apispec 2021-07-19 11:50:50 +01:00
Richard
6a7c305468 Started adding more content to openapi 2021-07-14 19:15:26 +01:00
Richard
48fa1842a9 Fixed stage schemas 
If missing=None, we need to specify allow_None=False
in order to generate valid OpenAPI.
This may also be fixed by an upstream change in LabThings.

Also, OneOf was being used incorrectly in StageTypeProperty.
 2021-07-13 22:53:35 +01:00
Richard
50ad9d4369 Fixed content dicts to be valid OpenAPI 
For functions that return JPEGs, we were
 using "content_type": "image/jpeg"
 instead we should use "content": { "image/jpeg": {}}
 2021-07-13 22:52:10 +01:00
Richard
9892c7079a moved find_microscope into functions 2021-07-13 22:50:42 +01:00
Richard
00531a93bf Fixed response descriptions for stream/RAM capture 2021-07-06 15:24:43 +01:00
Richard
c81c4eb64d Better API docs for autofocus extension 2021-07-06 15:24:17 +01:00
Richard
202d942c90 Add entry point to generate OpenAPI yaml/json 
This is designed to be used as a console entry point so we can generate
the OpenAPI description without starting the server.
 2021-07-06 15:23:42 +01:00
Richard Bowman
5b63745ad0 Merge branch 'imjoy-support' into 'master' 
Added imjoy support

Closes #157

See merge request openflexure/openflexure-microscope-server!120
 2021-06-29 12:08:52 +00:00
Richard
8157fa6d58 Add YAML export from APISpec 2021-06-27 21:08:48 +01:00
Richard
f5711d953d linter fixes 2021-06-22 12:09:01 +01:00
Richard
d73b0afd36 Disable ImJoy control 
If the environment variable is disabling ImJoy, don't allow
the user to enable it with the tick-box.
 2021-06-22 12:08:17 +01:00
Richard
33b3ffc7f7 Rely on store to enforce IMJOY_ENABLED 
This removes some now-redundant code.
 2021-06-22 12:07:27 +01:00
Richard
29de95fe74 Enforce ENABLE_IMJOY variable in store 
The store now won't let you enable imjoy if the environment
variable is not set to "true"
 2021-06-22 12:06:48 +01:00
Richard
3921f5de76 Remove commented-out code 2021-06-22 10:57:48 +01:00
Richard
03cb019864 Don't remember the "scanCapture" setting 
Given that it changes the "capture" button from
single image acquisition to a long running scan,
I think it's less confusing if the "scan capture" setting
is not remembered across page refreshes.
 2021-06-03 16:21:03 +01:00
Richard
318c4088dd Auto-open scan section if enabled 
Saving default to local storage has a problem:
if you have ticked "scan", the section is not
visible by default so it's easy to start a scan
by accident.  I've now forced it to be open if
the scanCapture checkbox is true.
 2021-06-03 16:16:00 +01:00
Richard
31faaaf161 Whitespace linting fixes 2021-06-03 16:10:03 +01:00
Richard
178d6fb84b Fix ame of CaptureContent 2021-06-03 16:09:51 +01:00
Richard
8afa503867 Scan settings are now remembered 
This is done in local storage, and I'm
quite pleased with how neat it is!
Happy to be corrected on a better way to pass `this` though!
 2021-06-03 16:09:40 +01:00
Richard
dae818b6b5 Typo in webpack directive 2021-05-31 12:46:30 +01:00
Richard
9d088916a9 Linter fixes 2021-05-31 12:45:30 +01:00
Richard
a1313ae1c5 Fix CSS for plugin list 2021-05-31 12:43:21 +01:00