Julian Stirling
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3ebc4578d3
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Show which background detector is active in GUI
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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1f2099e46f
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Add minimum standard deviations for ColourChannelDetectLUV
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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a2a6d870e2
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Make turing point check in z-stack optional
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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873968877b
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Log warning rather than error if the named background detector doesn't exist to prevent not booting if detectors change
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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79c94c96ed
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Set channel minima and error if any LUV channels have std==0
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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38b8c5baa5
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Apply suggestions from code review of branch scanning-stability
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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23f87869ac
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Add a new background detector based on an 8x8 grid
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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cf92d4f3ac
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Make autofocus considerably stricter, forcing a parabolic fit, and only one turning point
Background can still pass this much stricter check
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2025-12-02 09:57:24 +00:00 |
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Julian Stirling
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dabb195b08
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Ensure smart stack exits and saves on failure only if check background is false
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2025-12-02 09:57:24 +00:00 |
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jaknapper
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70e052fa21
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Check the firmware and log relevant messages
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2025-12-01 18:08:25 +00:00 |
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Julian Stirling
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d3bd921db2
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Merge branch 'visit-secondary-locations-first' into 'v3'
Visit secondary locations first
See merge request openflexure/openflexure-microscope-server!444
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2025-12-01 16:31:24 +00:00 |
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Julian Stirling
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ed9076a115
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Log an error if the sangaboard firmware is below v1.0.4
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2025-12-01 14:21:56 +00:00 |
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Julian Stirling
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a5d5ba4af8
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Update scan planner test pickles
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2025-11-28 12:00:35 +00:00 |
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Julian Stirling
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dfe7fb6c42
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Stop scan planner plots erroring if there are no secondary locations
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2025-11-28 12:00:35 +00:00 |
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Julian Stirling
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90be139575
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Update scan planners so secondary locations are imaged first and don't affect later planning
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2025-11-28 09:53:24 +00:00 |
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Julian Stirling
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cd53024c4f
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Update the scan test helpers so it is easier to save and plot
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2025-11-28 09:52:09 +00:00 |
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Joe Knapper
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23989977c2
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Merge branch 'manual-config' into 'v3'
Configuration for manual microscope
See merge request openflexure/openflexure-microscope-server!439
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2025-11-13 14:42:29 +00:00 |
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Julian Stirling
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11e9374dfa
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Merge branch 'consolidate-action-button' into 'v3'
Consolidate action buton to just a button
Closes #535
See merge request openflexure/openflexure-microscope-server!437
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2025-11-13 12:12:31 +00:00 |
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Julian Stirling
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fe77908253
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Make the findOngoingActions function plural to match what happens
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2025-11-13 11:51:03 +00:00 |
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Julian Stirling
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8333165307
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Merge branch '569-release-checklist' into 'v3'
Resolve "Release Checklist"
Closes #569
See merge request openflexure/openflexure-microscope-server!440
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2025-11-12 16:10:30 +00:00 |
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Beth Probert
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7df1fea643
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Fix typo
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2025-11-12 15:32:18 +00:00 |
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Beth Probert
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560f863c47
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Apply suggestions from code review of branch 569-release-checklist
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-11-12 15:29:15 +00:00 |
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Beth Probert
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1311cc103e
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Responding to comment on branching.
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2025-11-12 11:27:02 +00:00 |
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Beth Probert
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f128caedff
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Apply suggestions from code review of branch 569-release-checklist
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-11-12 11:10:44 +00:00 |
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Julian Stirling
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f3c79b746f
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Fix RGB vs BGR issue for opencv camera
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2025-11-11 18:12:37 +00:00 |
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Julian Stirling
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abb2698687
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Add config json for manual microscope
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2025-11-11 18:12:37 +00:00 |
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Julian Stirling
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3ecc41720d
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Merge branch 'recentre-with-rom-methods' into 'v3'
Recentre using RangeOfMotionThing methods
Closes #499 and #573
See merge request openflexure/openflexure-microscope-server!429
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2025-11-11 17:49:08 +00:00 |
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Julian Stirling
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614fd8b9e9
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Apply suggestions from code review of branch recentre-with-rom-methods
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
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2025-11-11 17:15:20 +00:00 |
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Julian Stirling
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b0b755f19b
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Update unit tests for algorithmic change to recentre
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2025-11-11 17:13:52 +00:00 |
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Julian Stirling
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2937010e95
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Move progress bar into the action button to stop components jumping
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2025-11-11 14:41:24 +00:00 |
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Julian Stirling
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8b785823ab
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Fix end of action behaviours and looging errors
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2025-11-11 14:41:24 +00:00 |
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Julian Stirling
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dd0a57520b
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Action button uses mixins for invoking and polling actions
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2025-11-11 14:41:24 +00:00 |
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Julian Stirling
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4910bef717
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Split the action status modal from the action button
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2025-11-11 14:41:24 +00:00 |
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Julian Stirling
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5074f75442
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Merge branch 'fewer-ui-assumptions' into 'v3'
UI customises to available Things
Closes #510 and #385
See merge request openflexure/openflexure-microscope-server!435
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2025-11-11 14:36:22 +00:00 |
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Julian Stirling
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ed9b8ff01d
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Adjust algorithm to start checks for centre after first 5 mendium sized moves & improve logging.
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2025-11-11 12:51:04 +00:00 |
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Julian Stirling
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b8742b449c
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Apply suggestions from code review of branch recentre-with-rom-methods
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-11-11 12:37:09 +00:00 |
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Julian Stirling
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bb703ab2b1
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Merge branch 'temperature-ccm' into 'v3'
Ship our own default tuning files
Closes #427 and #565
See merge request openflexure/openflexure-microscope-server!410
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2025-11-11 12:04:07 +00:00 |
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Julian Stirling
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7354f09319
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Update picamera coverage info
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2025-11-11 11:29:49 +00:00 |
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Julian Stirling
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8a4e6390c7
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Apply suggestions from code review of branch temperature-ccm
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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d0d30222b4
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Update sensor mode picamera test to ensure that camera tests don't use saved settings
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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5c56c1e851
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Apply suggestions from code review of branch temperature-ccm
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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f432247446
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Fix typos during refactor caught by CI
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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982c55905c
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Update default exposure in picam and defaul LST values in tuning files, and set default colour gains from LST
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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c0362ee8dd
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Make picamera tests compatible with updates
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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13d3871059
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Add testing for loading the tuning files in the normal test suite now not tied to picamera
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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6763845e38
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Let the tuning file utils handle lens shading table manipulation.
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2025-11-11 11:20:08 +00:00 |
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Julian Stirling
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ec16cc17f8
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Update tuning file utils for our own tuning files.
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2025-11-11 11:20:07 +00:00 |
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Julian Stirling
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f74a51866a
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Adjust tuning files to have adaptive algorithms turned off.
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2025-11-11 11:20:07 +00:00 |
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Julian Stirling
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01a883e95c
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Reset CCM resets to the CCM in the default tuning file.
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2025-11-11 11:20:07 +00:00 |
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Julian Stirling
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cec6f4af73
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Load tuning files in without using Picamera2
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2025-11-11 11:20:07 +00:00 |
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