Chish36
e327305549
Docstring added
2025-10-17 15:19:05 +01:00
Chish36
b90ecf8c49
Motion detection is now a function and a few other minor tweaks
2025-10-17 15:19:05 +01:00
Chish36
ada120db9c
Minor tweaks to z_pred and lowered tolerance for failure
2025-10-17 15:19:05 +01:00
Chish36
154870142d
Optional autofocus and other minor tweaks
2025-10-17 15:19:05 +01:00
Chish36
725f993366
Typehints and docstrings added
2025-10-17 15:19:05 +01:00
Chish36
0267251a18
Move and measure and z predict are now separate functions
2025-10-17 15:19:05 +01:00
Chish36
71e21d1e72
Step range and all other data is saved to stage_measure thing
2025-10-17 15:19:05 +01:00
Chish36
e0b086bdc8
Added parisitic motion detect, z prediction and saved results
2025-10-17 15:19:05 +01:00
Chish36
eb01aaf017
Completes all necessary movements along a single axis
2025-10-17 15:19:05 +01:00
jaknapper
416830cbe8
Strip new lines when logging stitching
2025-10-10 12:27:09 +01:00
Julian Stirling
4135532476
Apply suggestions from code review of branch ce-disable
2025-10-09 17:46:13 +01:00
Joe Knapper
909de1709d
set ce_enable in tuning_utils
2025-10-09 15:36:01 +01:00
Julian Stirling
94541b2d4f
Merge branch 'stack-height-sanitise' into 'v3'
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Verify stack params at start of scan main loop
Closes #455
See merge request openflexure/openflexure-microscope-server!400
2025-10-09 14:00:59 +00:00
Joe Knapper
089beae01a
Tests for coercing stack params to valid values.
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Co-authored with Julian Stirling
2025-10-09 14:26:01 +01:00
Joe Knapper
fa6fdb1a67
Stack parameter coercion in create_stack_params
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Co-authored with Julian Stirling
2025-10-09 14:23:47 +01:00
Joe Knapper
33ff356f76
Apply suggestions from code review of branch stack-height-sanitise
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-09 14:22:48 +01:00
Richard Bowman
c89db72d0a
Don't coerce or log from validators.
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Passing a logger in to the Model is hard: I've changed the
StackParams model so that it only validates, and raises a
ValueError if it's not correct.
Pydantic will turn the ValueError into a ValidationError.
2025-10-09 14:22:45 +01:00
Joe Knapper
05e0394485
StackParams as pydantic basemodel with validators
2025-10-09 14:22:42 +01:00
Joe Knapper
f90e716d8e
Stack limits as globals
2025-10-09 14:22:40 +01:00
jaknapper
18e49ba50c
Test stack params at start of scan main loop
2025-10-09 14:22:37 +01:00
Julian Stirling
6a2d69ed04
Merge branch 'primary-buttons' into 'v3'
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Clean up primary vs secondary buttons
Closes #554
See merge request openflexure/openflexure-microscope-server!402
2025-10-07 14:15:45 +00:00
Joe Knapper
dae5b816cc
Merge branch 'sample-size-sim' into 'v3'
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Simulate a rectangular sample
Closes #516
See merge request openflexure/openflexure-microscope-server!401
2025-10-07 10:09:37 +00:00
Julian Stirling
7d794d1a22
Stop showing other picamera calibration buttons in calibration wizard
2025-10-07 10:52:06 +01:00
Joe Knapper
a34a9f99c5
Apply suggestions from code review of branch sample-size-sim
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-06 10:16:22 +00:00
jaknapper
a2facca43e
Clean up primary vs secondary buttons
2025-10-02 16:16:32 +01:00
Joe Knapper
2fc92fc1ff
Test sample and canvas size
2025-10-02 13:56:08 +01:00
Julian Stirling
4345f8c336
Merge branch 'tweak-scan-list' into 'v3'
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Scan list improvements
Closes #391
See merge request openflexure/openflexure-microscope-server!397
2025-09-29 08:55:13 +00:00
Joe Knapper
3812e9053a
Docstring fix
2025-09-26 17:16:55 +01:00
Joe Knapper
3deb5a4897
Merge branch 'cancel-scan-early-bugfix' into 'v3'
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Fix error trying to purge empty scans if current scan has no images
Closes #563
See merge request openflexure/openflexure-microscope-server!398
2025-09-26 09:33:21 +00:00
Joe Knapper
0a687e1678
Ruff
2025-09-25 18:51:33 +01:00
Joe Knapper
e6ba7f5a9b
Merge branch 'sample-size-sim' of gitlab.com:openflexure/openflexure-microscope-server into sample-size-sim
2025-09-25 16:14:17 +01:00
Joe Knapper
bfe0064ce8
Update dummy test and fix sample coords
2025-09-25 16:14:13 +01:00
Julian Stirling
14cc3f9fcf
Fix error trying to purge empty scans if current scan has no images
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Closes #563
2025-09-25 15:12:34 +01:00
Joe Knapper
39b085a0c2
Apply suggestions from code review of branch sample-size-sim
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-09-25 13:35:55 +00:00
Joe Knapper
16bc7aeede
Apply suggestions from code review of branch sample-size-sim
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-09-25 13:33:16 +00:00
Joe Knapper
d3aeb75ed9
Fixed centre typo
2025-09-25 12:52:17 +01:00
Joe Knapper
89214ea2ec
Add sphinx docstrings, add sprites in a way to test sizes match
2025-09-25 12:05:49 +01:00
Beth Probert
1b4d83ae5d
Resolve "Make Walkthroughs for Software Installation"
2025-09-25 11:03:53 +00:00
Joe Knapper
49070d4163
Generated limited size sample of larger blobs, move faster in xy
2025-09-24 19:31:11 +01:00
Joe Knapper
afcb02bf7e
Increase density of blobs, limit range
2025-09-24 18:09:08 +01:00
Julian Stirling
cd6bcd196f
Don't show buttons for ongoing scans.
2025-09-19 18:29:34 +01:00
Julian Stirling
b9ca8b3094
Apply suggestions from code review of branch Increased-linting
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-09-19 10:16:47 +00:00
Julian Stirling
6b1e40f689
Add flake8-simplicity rules
2025-09-18 16:21:45 +01:00
Julian Stirling
528c6a2b63
Add PyLint ruff checks
2025-09-18 16:21:45 +01:00
Julian Stirling
65f172d650
Stop using print statments or root level loggers
2025-09-18 16:21:45 +01:00
Julian Stirling
338d49f9e6
Remove remaining TODOs in favour of issues
2025-09-18 16:10:36 +01:00
Julian Stirling
ef89b536fc
Remove assert statements from production code
2025-09-18 16:10:36 +01:00
Julian Stirling
e89ad93535
Specify the camera board not the sensor model during configuration.
2025-09-18 13:00:46 +01:00
Julian Stirling
ca66234379
Apply suggestions from code review of branch reorganise-picamera-tuning-and-recal
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-09-18 13:00:46 +01:00
Julian Stirling
f24272bc7f
Set sensor_model as kwarg to SteamingPicameraThing. From this load sensor information.
2025-09-18 13:00:46 +01:00
