rahix/openflexure-microscope-server
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720 commits

Author SHA1 Message Date
Julian Stirling
24233412af Start adding ANN ruff rules 2025-08-27 18:54:15 +01:00
Julian Stirling
b46f429c1f Apply suggestions from code review of branch unify-jpeg-capture 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-08-27 17:30:51 +01:00
Julian Stirling
5bb742881f Fix typehints and docs for opencv camera 2025-08-27 17:30:51 +01:00
Julian Stirling
b124355fed Fix capture array for raw stream 2025-08-27 17:14:49 +01:00
Julian Stirling
7cd6b11411 Further unification of camera array functionality 2025-08-27 17:14:49 +01:00
Julian Stirling
5484b51a1e Unify JPEG capture, metadata, and saving; reducing duplication 2025-08-27 17:14:49 +01:00
Julian Stirling
4450fda945 Merge branch 'simulation_wrap' into 'v3' 
Make simulation image wrap to prevent errors when moving out of range.

Closes #513

See merge request openflexure/openflexure-microscope-server!380
 2025-08-27 16:13:24 +00:00
Julian Stirling
2325dced5e Merge branch 'test-server-startup' into 'v3' 
Test server startup

See merge request openflexure/openflexure-microscope-server!379
 2025-08-27 16:11:34 +00:00
Julian Stirling
19ae7e9802 Merge branch 'pydantic-syntax' into 'v3' 
Update BaseModels to use ConfigDict rather than directly use a dictionary

See merge request openflexure/openflexure-microscope-server!381
 2025-08-27 16:10:28 +00:00
Julian Stirling
4af4e89c0a Merge branch 'no-uvicorn.error-logs-without-error' into 'v3' 
Stop reporting uvicorn.error in log file unless log it is an error

Closes #511

See merge request openflexure/openflexure-microscope-server!375
 2025-08-27 14:30:11 +00:00
Julian Stirling
5515d55e6d Merge branch 'error-types' into 'v3' 
Tweak a few error types.

Closes #320

See merge request openflexure/openflexure-microscope-server!376
 2025-08-27 13:47:26 +00:00
Julian Stirling
353d311c1e Apply suggestions from code review of branch no-uvicorn.error-logs-without-error 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-08-27 13:24:37 +00:00
Julian Stirling
7f7809de9d Update BaseModels to use ConfigDict rather than directly use a dictionary 2025-08-26 16:12:41 +01:00
Julian Stirling
c31fffad5b Make simulation image wrap to prevent errors when moving out of range. 2025-08-26 16:03:56 +01:00
Julian Stirling
2d89cdd3a3 Add tests for the legacy api 2025-08-24 20:45:55 +01:00
Julian Stirling
9257c4489e Apply suggestions from code review of branch prevent-broken-frames-ending-scans 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-08-21 18:05:46 +01:00
Julian Stirling
dade26cde1 Tweak a few error types. 2025-08-21 16:11:30 +01:00
Julian Stirling
95969c5daa Improve typehinting for logging 2025-08-21 15:49:00 +01:00
Julian Stirling
3529c96ec6 Stop reporting uvicorn.error in log file unless log it is an error 2025-08-21 15:40:27 +01:00
Julian Stirling
6fa4e4dc64 Add a grab_as_array camera method that grabs from the stream but catches broken jpegs and retries 2025-08-21 13:35:21 +01:00
Julian Stirling
0a9b6be9bd Raise error if tuning algorithm cannot be returned, unless explicityly asked not to 2025-08-21 12:44:57 +01:00
Julian Stirling
fdae0b9226 Add get_tuning_algo method to StreamingPiCamera2 2025-08-20 14:53:53 +01:00
Julian Stirling
ab0bece70b Deepcopy default tuning file so it isn't affected by calibration. 2025-08-20 14:51:19 +01:00
jaknapper
85e10189be Restore behaviour that uses nearest focused pos if adjacent fails 2025-08-19 14:54:38 +01:00
jaknapper
501fe3f9d2 Switch to neighbour cutoff based on dx and dy 2025-08-19 14:07:30 +01:00
jaknapper
422e63ea90 Increase neighbour ratio to 1.6 2025-08-15 18:56:26 +01:00
Joe Knapper
99652eca41 Merge branch 'log-oom-error' into 'v3' 
Custom sigkill error

See merge request openflexure/openflexure-microscope-server!351
 2025-08-15 12:13:25 +00:00
Julian Stirling
46802db308 Merge branch 'check-static-files' into 'v3' 
Check static files exist or throw a useful error

See merge request openflexure/openflexure-microscope-server!368
 2025-08-15 11:22:41 +00:00
Joe Knapper
c2980dc988 Merge branch 'typehint-autofocus' into 'v3' 
Typehints and better variable names for autofocus

Closes #271

See merge request openflexure/openflexure-microscope-server!367
 2025-08-15 10:30:36 +00:00
Joe Knapper
f383365cf7 Apply suggestions from code review of branch typehint-autofocus 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-08-15 10:30:29 +00:00
Joe Knapper
7b2a4cc3f6 Merge branch 'camera-deps' into 'v3' 
Change all CameraDeps to CameraClients

Closes #483

See merge request openflexure/openflexure-microscope-server!366
 2025-08-15 10:16:36 +00:00
Joe Knapper
bd115e0023 Change all CameraDeps to CameraClients 2025-08-15 10:16:36 +00:00
Julian Stirling
3289221c6b Add unit tests for all of serving static files. Update docs in src to clarify behaviour 2025-08-15 11:01:43 +01:00
Julian Stirling
44e24f42a6 Check webapp is available or give useful error 2025-08-15 09:21:38 +01:00
Julian Stirling
bfdbbb9ad2 Merge branch 'request-no-cache' into 'v3' 
Request no cache

See merge request openflexure/openflexure-microscope-server!361
 2025-08-14 19:59:58 +00:00
Joe Knapper
504b81fef6 Typehints and better variable names for autofocus 2025-08-14 14:51:03 +01:00
Julian Stirling
98c023032c Allow fonts to cache 2025-08-14 14:45:20 +01:00
Joe Knapper
1e368aef81 Apply suggestions from code review of branch log-oom-error 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-08-14 14:09:54 +01:00
Julian Stirling
af93db7de8 Merge branch 'let-preview-stitch-cancel' into 'v3' 
Allow preview to cancel!

See merge request openflexure/openflexure-microscope-server!359
 2025-08-13 15:18:13 +00:00
jaknapper
025e6b1fba Request no caching for static files like webapp 2025-08-12 18:47:02 +01:00
Julian Stirling
05644456e0 Allow preview to cancel! 2025-08-12 16:41:55 +01:00
Julian Stirling
6142a267db Add flake8 bugbear checks 2025-08-12 13:09:43 +01:00
jaknapper
7cedd31ff4 Default tile size 8192 2025-08-08 10:43:54 +01:00
jaknapper
279055108f Set final stitch tile size to 4096px 2025-08-07 18:30:14 +01:00
jaknapper
4d32152427 Custom Memory error changed to generic sigkill 2025-08-07 18:10:02 +01:00
jaknapper
feec53aa1f Custom out of memory error 2025-08-07 17:56:34 +01:00
Julian Stirling
dbdf254154 Fix CLI arg for FinalStitcher, and a docstring typo. 2025-08-07 15:20:14 +01:00
Julian Stirling
5caae613dc Apply suggestions from code review of branch yet-another-smart-scan-refactor 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-08-07 13:55:47 +00:00
Julian Stirling
7727d0a51d Update language in BaseStitcher to clarify that the stitching uses subprocess not threading 2025-08-07 12:06:58 +01:00
Julian Stirling
cd311f08bf Update stiching to differentiate bwtween stitchers that use a thread and those that block 2025-08-06 17:47:33 +01:00