Julian Stirling
573330dede
Add tests for z_stack
2025-12-02 09:57:24 +00:00
Julian Stirling
b9c58b70c9
Looping autofocus errors on failure to find focus. Test looping autofocus algorithm
2025-12-02 09:57:24 +00:00
Julian Stirling
a2a6d870e2
Make turing point check in z-stack optional
2025-12-02 09:57:24 +00:00
Julian Stirling
38b8c5baa5
Apply suggestions from code review of branch scanning-stability
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-12-02 09:57:24 +00:00
Julian Stirling
cf92d4f3ac
Make autofocus considerably stricter, forcing a parabolic fit, and only one turning point
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Background can still pass this much stricter check
2025-12-02 09:57:24 +00:00
Julian Stirling
dabb195b08
Ensure smart stack exits and saves on failure only if check background is false
2025-12-02 09:57:24 +00:00
Joe Knapper
089beae01a
Tests for coercing stack params to valid values.
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Co-authored with Julian Stirling
2025-10-09 14:26:01 +01:00
Joe Knapper
fa6fdb1a67
Stack parameter coercion in create_stack_params
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Co-authored with Julian Stirling
2025-10-09 14:23:47 +01:00
Joe Knapper
33ff356f76
Apply suggestions from code review of branch stack-height-sanitise
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-09 14:22:48 +01:00
Richard Bowman
c89db72d0a
Don't coerce or log from validators.
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Passing a logger in to the Model is hard: I've changed the
StackParams model so that it only validates, and raises a
ValueError if it's not correct.
Pydantic will turn the ValueError into a ValidationError.
2025-10-09 14:22:45 +01:00
Joe Knapper
05e0394485
StackParams as pydantic basemodel with validators
2025-10-09 14:22:42 +01:00
Joe Knapper
f90e716d8e
Stack limits as globals
2025-10-09 14:22:40 +01:00
jaknapper
18e49ba50c
Test stack params at start of scan main loop
2025-10-09 14:22:37 +01:00
Julian Stirling
528c6a2b63
Add PyLint ruff checks
2025-09-18 16:21:45 +01:00
Julian Stirling
65f172d650
Stop using print statments or root level loggers
2025-09-18 16:21:45 +01:00
Julian Stirling
2ce49088e7
Add return typehints to magic methods
2025-08-27 18:56:09 +01:00
Julian Stirling
4c46330959
Add ANN20X rules to ruff
2025-08-27 18:56:08 +01:00
Julian Stirling
d673196671
Add ANN002, and ANN003 rules
2025-08-27 18:54:16 +01:00
Julian Stirling
24233412af
Start adding ANN ruff rules
2025-08-27 18:54:15 +01:00
Julian Stirling
dade26cde1
Tweak a few error types.
2025-08-21 16:11:30 +01:00
Joe Knapper
c2980dc988
Merge branch 'typehint-autofocus' into 'v3'
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Typehints and better variable names for autofocus
Closes #271
See merge request openflexure/openflexure-microscope-server!367
2025-08-15 10:30:36 +00:00
Joe Knapper
f383365cf7
Apply suggestions from code review of branch typehint-autofocus
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-08-15 10:30:29 +00:00
Joe Knapper
bd115e0023
Change all CameraDeps to CameraClients
2025-08-15 10:16:36 +00:00
Joe Knapper
504b81fef6
Typehints and better variable names for autofocus
2025-08-14 14:51:03 +01:00
Joe Knapper
c00c027ab1
Apply suggestions from code review of branch img-name
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-07-31 14:52:21 +00:00
jaknapper
df918bf286
Prepend images with img_
2025-07-31 13:53:57 +01:00
Julian Stirling
f91582c9eb
Apply suggestions from code review of branch better-docstrings
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Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
2025-07-10 23:31:34 +00:00
Julian Stirling
7e6017f648
Get codespell passing and add it as a CI job.
2025-07-11 00:16:25 +01:00
Julian Stirling
e33fecaef0
Documentation of python magic class methods
2025-07-10 16:46:10 +01:00
Julian Stirling
1bbbfeef0f
Add docstrings to public methods
2025-07-10 14:04:48 +01:00
Julian Stirling
a30b726b91
Class docstrings
2025-07-10 13:27:41 +01:00
Julian Stirling
11a1fd7f85
Move ThingSetting and ThingProperty docstrings under the definition.
2025-07-10 10:43:05 +01:00
Julian Stirling
80beeea07b
Add punctuation to docstrings
2025-07-10 09:24:50 +01:00
Julian Stirling
4dc41bb008
Single line summaries of docstrings
2025-07-10 09:24:49 +01:00
Julian Stirling
35d47fe3ed
Starting docstring on the same lines as the quotations
2025-07-10 09:24:49 +01:00
Julian Stirling
a84a916719
Restructured text fixes so that pydoctor would return without an error
2025-07-09 23:59:08 +01:00
Julian Stirling
52a80ef66b
And adjust for new as lt import
2025-07-07 15:25:14 +01:00
Julian Stirling
840ed7f20e
Update Thing Settings to use the new format provided by PR #110 of Labthings FastAPI
2025-07-07 15:24:30 +01:00
Julian Stirling
8002600fcf
Apply suggestions from code review of branch fast-stack
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-06-27 16:40:18 +00:00
Julian Stirling
9a92fd478a
Final docstring and testing updates based on code review
2025-06-27 16:54:28 +01:00
Julian Stirling
46f3d21632
Apply suggestions from code review of branch fast-stack
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-06-27 11:52:53 +01:00
Julian Stirling
fc6c13f40e
Apply suggestions from code review of branch fast-stack
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-06-27 10:41:53 +00:00
Julian Stirling
73e54b802b
Stop smart stack infinietly looping
2025-06-27 01:29:26 +01:00
Julian Stirling
2ce2f998fa
add tests for helper classes defined by fast stack
2025-06-27 00:34:51 +01:00
Julian Stirling
2aea6a2569
Docstrings and stop using Pydantic for ScanParameters
2025-06-26 19:46:25 +01:00
Julian Stirling
43d5f2fdfe
Change capture_resolution to save resolution, because it is used for saving not capture
2025-06-26 19:00:52 +01:00
Julian Stirling
6a87805b47
Fixing a number of issues from the merge and refactor.
2025-06-26 18:29:12 +01:00
Julian Stirling
61dd5e4958
Compete first (untested) pass of trying to make fast stack compatible with new memory captures
2025-06-26 17:43:11 +01:00
Julian Stirling
fda0a6e1ab
Merge branch 'v3' into fast-stack, with conflict resolution but not fully
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working yet
2025-06-26 11:50:24 +01:00
Joe Knapper
378998d230
Merge branch 'jpeg-capture-in-stacking' into 'v3'
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2MP from 8MP capturing
Closes #364 , #413 , #298 , #303 , #288 , #358 , and #433
See merge request openflexure/openflexure-microscope-server!251
2025-06-25 17:57:51 +00:00
