jaknapper
ab0e00eb1d
Fix ruff
2025-10-21 15:30:47 +01:00
jaknapper
d913db92af
CCM for HQ cam also
2025-10-21 15:14:42 +01:00
jaknapper
18ad404a57
Set colour correction to interpolate value
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Update hardware test readme
Add pause between calibrating camera and setting background
2025-10-21 13:37:50 +01:00
Julian Stirling
ff606ff10d
Apply spelling corrections and variable renaming from code review of branch improve-scan-planning
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-10-20 18:26:20 +01:00
Julian Stirling
dbb0a4ac16
Fix issues found by MyPy
2025-10-19 23:04:24 +01:00
Julian Stirling
f781e6b674
Image intermediate locations between sample and background
2025-10-19 21:29:11 +01:00
Julian Stirling
39a04df5be
Objects for scan locations allowing more sophisitcated tracking.
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This commit updates the scan planners to allow more sophisticated
tracking of past positions. Currently it still checks that
the algorithm is unchanged from past behaviour.
2025-10-19 19:55:36 +01:00
jaknapper
416830cbe8
Strip new lines when logging stitching
2025-10-10 12:27:09 +01:00
Julian Stirling
4135532476
Apply suggestions from code review of branch ce-disable
2025-10-09 17:46:13 +01:00
Joe Knapper
909de1709d
set ce_enable in tuning_utils
2025-10-09 15:36:01 +01:00
Julian Stirling
94541b2d4f
Merge branch 'stack-height-sanitise' into 'v3'
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Verify stack params at start of scan main loop
Closes #455
See merge request openflexure/openflexure-microscope-server!400
2025-10-09 14:00:59 +00:00
Joe Knapper
089beae01a
Tests for coercing stack params to valid values.
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Co-authored with Julian Stirling
2025-10-09 14:26:01 +01:00
Joe Knapper
fa6fdb1a67
Stack parameter coercion in create_stack_params
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Co-authored with Julian Stirling
2025-10-09 14:23:47 +01:00
Joe Knapper
33ff356f76
Apply suggestions from code review of branch stack-height-sanitise
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-09 14:22:48 +01:00
Richard Bowman
c89db72d0a
Don't coerce or log from validators.
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Passing a logger in to the Model is hard: I've changed the
StackParams model so that it only validates, and raises a
ValueError if it's not correct.
Pydantic will turn the ValueError into a ValidationError.
2025-10-09 14:22:45 +01:00
Joe Knapper
05e0394485
StackParams as pydantic basemodel with validators
2025-10-09 14:22:42 +01:00
Joe Knapper
f90e716d8e
Stack limits as globals
2025-10-09 14:22:40 +01:00
jaknapper
18e49ba50c
Test stack params at start of scan main loop
2025-10-09 14:22:37 +01:00
Julian Stirling
6a2d69ed04
Merge branch 'primary-buttons' into 'v3'
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Clean up primary vs secondary buttons
Closes #554
See merge request openflexure/openflexure-microscope-server!402
2025-10-07 14:15:45 +00:00
Joe Knapper
dae5b816cc
Merge branch 'sample-size-sim' into 'v3'
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Simulate a rectangular sample
Closes #516
See merge request openflexure/openflexure-microscope-server!401
2025-10-07 10:09:37 +00:00
Julian Stirling
7d794d1a22
Stop showing other picamera calibration buttons in calibration wizard
2025-10-07 10:52:06 +01:00
Joe Knapper
a34a9f99c5
Apply suggestions from code review of branch sample-size-sim
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-10-06 10:16:22 +00:00
jaknapper
a2facca43e
Clean up primary vs secondary buttons
2025-10-02 16:16:32 +01:00
Joe Knapper
2fc92fc1ff
Test sample and canvas size
2025-10-02 13:56:08 +01:00
Julian Stirling
4345f8c336
Merge branch 'tweak-scan-list' into 'v3'
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Scan list improvements
Closes #391
See merge request openflexure/openflexure-microscope-server!397
2025-09-29 08:55:13 +00:00
Joe Knapper
3812e9053a
Docstring fix
2025-09-26 17:16:55 +01:00
Joe Knapper
3deb5a4897
Merge branch 'cancel-scan-early-bugfix' into 'v3'
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Fix error trying to purge empty scans if current scan has no images
Closes #563
See merge request openflexure/openflexure-microscope-server!398
2025-09-26 09:33:21 +00:00
Joe Knapper
0a687e1678
Ruff
2025-09-25 18:51:33 +01:00
Joe Knapper
e6ba7f5a9b
Merge branch 'sample-size-sim' of gitlab.com:openflexure/openflexure-microscope-server into sample-size-sim
2025-09-25 16:14:17 +01:00
Joe Knapper
bfe0064ce8
Update dummy test and fix sample coords
2025-09-25 16:14:13 +01:00
Julian Stirling
14cc3f9fcf
Fix error trying to purge empty scans if current scan has no images
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Closes #563
2025-09-25 15:12:34 +01:00
Joe Knapper
39b085a0c2
Apply suggestions from code review of branch sample-size-sim
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-09-25 13:35:55 +00:00
Joe Knapper
16bc7aeede
Apply suggestions from code review of branch sample-size-sim
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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-09-25 13:33:16 +00:00
Joe Knapper
d3aeb75ed9
Fixed centre typo
2025-09-25 12:52:17 +01:00
Joe Knapper
89214ea2ec
Add sphinx docstrings, add sprites in a way to test sizes match
2025-09-25 12:05:49 +01:00
Beth Probert
1b4d83ae5d
Resolve "Make Walkthroughs for Software Installation"
2025-09-25 11:03:53 +00:00
Joe Knapper
49070d4163
Generated limited size sample of larger blobs, move faster in xy
2025-09-24 19:31:11 +01:00
Joe Knapper
afcb02bf7e
Increase density of blobs, limit range
2025-09-24 18:09:08 +01:00
Julian Stirling
cd6bcd196f
Don't show buttons for ongoing scans.
2025-09-19 18:29:34 +01:00
Julian Stirling
b9ca8b3094
Apply suggestions from code review of branch Increased-linting
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-09-19 10:16:47 +00:00
Julian Stirling
6b1e40f689
Add flake8-simplicity rules
2025-09-18 16:21:45 +01:00
Julian Stirling
528c6a2b63
Add PyLint ruff checks
2025-09-18 16:21:45 +01:00
Julian Stirling
65f172d650
Stop using print statments or root level loggers
2025-09-18 16:21:45 +01:00
Julian Stirling
338d49f9e6
Remove remaining TODOs in favour of issues
2025-09-18 16:10:36 +01:00
Julian Stirling
ef89b536fc
Remove assert statements from production code
2025-09-18 16:10:36 +01:00
Julian Stirling
e89ad93535
Specify the camera board not the sensor model during configuration.
2025-09-18 13:00:46 +01:00
Julian Stirling
ca66234379
Apply suggestions from code review of branch reorganise-picamera-tuning-and-recal
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-09-18 13:00:46 +01:00
Julian Stirling
f24272bc7f
Set sensor_model as kwarg to SteamingPicameraThing. From this load sensor information.
2025-09-18 13:00:46 +01:00
Julian Stirling
c16a0391df
Divide up tuning file modification from camera actions for recalibration.
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* Ensure that funtions only called locally by recalibrate utils are private
* Move public API to the top of the recalibrate utils file
* Move files that only alter the tuning dictionary to their own file
This makes the recalibration API used by PiCamera much more clearly defined, which
helps to plan out how to allow for different models.
2025-09-18 13:00:46 +01:00
jaknapper
5566125e6e
Update picamera file to HQ parameters
2025-09-18 13:00:46 +01:00
