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1005 commits

Author SHA1 Message Date
Julian Stirling
a82fcca339 Move smart stacking into a mixin so it can be re-used in other workflows 2026-03-24 15:58:04 +00:00
Joe Knapper
91075af70e Apply suggestions from code review of branch sigkill-handling 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2026-03-18 14:51:32 +00:00
Joe Knapper
0618263830 Switch to ignoring line 2026-03-18 14:12:27 +00:00
Joe Knapper
1f43d1cc53 Explicit windows check before sigkill for mypy 2026-03-18 12:40:55 +00:00
Joe Knapper
19f422b2cf Merge branch 'exposure-test' into 'v3' 
Flush more frames and use a request when doing exposure time

Closes #639

See merge request openflexure/openflexure-microscope-server!540
 2026-03-17 14:30:24 +00:00
jaknapper
0bc6e45df9 Picamera test 2026-03-16 16:33:07 +00:00
jaknapper
a11d46777f Only drop frames when setting min exposure time 2026-03-16 15:01:10 +00:00
Joe Knapper
3b84c266b4 Apply suggestions from code review of branch exposure-test 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2026-03-16 14:31:21 +00:00
jaknapper
ae04f3b133 Drop frame drop to 2 2026-03-13 13:22:56 +00:00
jaknapper
a4aac53072 Flush more frames and use a request when doing exposure time 2026-03-13 10:48:22 +00:00
Joe Knapper
68c9f76fc0 Fix missing import 2026-03-12 16:11:41 +00:00
Joe Knapper
5ce77538d1 Fix tests now we dont do extra backlash moves 2026-03-12 14:53:55 +00:00
jaknapper
b43150c8bb Remove backlash correction from basic stack, as this is handled by move rel 2026-03-12 14:53:55 +00:00
Joe Knapper
ffb9a4d509 Add CChip workflow to scan_workflows 2026-03-12 14:53:55 +00:00
Julian Stirling
36111f4da3 Merge branch 'stream-rder' into 'v3' 
Handle scan settings, then change stream, then pre-scan procedure when scanning

See merge request openflexure/openflexure-microscope-server!442
 2026-03-11 11:52:03 +00:00
Joe Knapper
2e1066477e Add parser.path to html sanitiser, fixing tests 2026-03-11 10:24:40 +00:00
Julian Stirling
c4d0c0e9da Explicit header, text and bullet blocks rather than one HTML block in ui spec 2026-03-10 15:25:37 +00:00
Julian Stirling
85ebfef44a Improve and test html sanitisation 2026-03-10 15:25:37 +00:00
Julian Stirling
0bfec5d046 Apply suggestions from code review of branch dynamic-ui 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-03-10 15:25:37 +00:00
Julian Stirling
eccf26851e Reintroduce recactive button state for background detect 2026-03-10 15:25:37 +00:00
Julian Stirling
4da05b1869 Move background detect settings into SlideScan 2026-03-10 15:25:37 +00:00
Julian Stirling
bfef998300 Move more of scan workflow UI into the server 2026-03-10 15:25:37 +00:00
Julian Stirling
ca21ab03c6 Tidy up server specified interface 2026-03-10 15:25:37 +00:00
Julian Stirling
9f2cde2275 Implement recursive Interface in vue 2026-03-10 15:25:36 +00:00
Julian Stirling
a11f9b7f62 Start making a structure for general UI specification 2026-03-10 15:25:36 +00:00
Joe Knapper
2e99e4c4c2 Merge branch '523-improve-validation-checks' into 'v3' 
Improve Validation Checks

Closes #523

See merge request openflexure/openflexure-microscope-server!524
 2026-03-09 19:19:18 +00:00
Joe Knapper
b0c9223b04 Move pre_scan and switch stream as late as possible 2026-03-09 18:53:39 +00:00
Beth Probert
6d66dd0ed8 Change make_path_safe to is_path_safe and update tests to reflect this 2026-03-09 15:45:32 +00:00
Beth Probert
f50b3d5cfa Allow spaces in linux paths 2026-03-09 14:29:24 +00:00
Beth Probert
968237bec0 Ruff checks 2026-03-09 14:02:15 +00:00
Beth Probert
fc437f529c Merge branch '523-improve-validation-checks' of https://gitlab.com/openflexure/openflexure-microscope-server into 523-improve-validation-checks 2026-03-09 13:54:45 +00:00
Beth Probert
f67699fbc8 Raise warnings if there are unsafe file path elements rather than coercing file paths. Stitching still raises an error if your file name is unsafe 2026-03-09 13:54:43 +00:00
Beth Probert
14b3e5a627 Apply suggestions from code review of branch 523-improve-validation-checks 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-03-07 18:17:43 +00:00
Joe Knapper
25c733a0c3 Apply suggestions from code review of branch check-setting-validation 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-03-07 18:14:22 +00:00
Joe Knapper
c9cc4e8468 Apply suggestions from code review of branch check-setting-validation 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-03-07 18:14:22 +00:00
Joe Knapper
99b9b0f3d6 Add limits to noise level, sample density and downsample 2026-03-07 18:14:22 +00:00
Joe Knapper
06f12973f4 Add limits to background detect and settling time settings 2026-03-07 18:14:22 +00:00
Beth Probert
349485d43b Remove multi-underscores from allowed names 2026-03-06 15:52:50 +00:00
Beth Probert
2c2f97cb56 Force file names to be lower case to avoid Windows issues around case sensitivity when checking if a file already exists. Path names can be uppercase as these will be defined on a users system and pre-exist. Files are created by us so we can force sanitation 2026-03-06 15:37:01 +00:00
Julian Stirling
011fc5a795 Fix spellings found as codespell updates 2026-03-06 15:06:53 +00:00
Beth Probert
35f7adcf07 Codespell 2026-03-06 14:16:42 +00:00
Beth Probert
4395d4001c Allow relative imports with two dots at start of path. Update unit tests. 2026-03-06 14:13:00 +00:00
Beth Probert
e5429d6cda Change make_path_safe to allow single dot relative imports, but no dots anywhere else. Added new unit tests for this. 2026-03-06 14:07:07 +00:00
Beth Probert
35efba19b8 Use pytest parametrize for better coverage of forbidden commands and reserved names 2026-03-05 13:55:05 +00:00
Beth Probert
48f6e1b369 Allow python and python3 as stitching commands. They are allowed. Move stitching tests into one file 2026-03-05 13:35:21 +00:00
Beth Probert
98e71207c5 Add forbidden windows commands to stitching and utilities to check for file name sanitation. Unit tests also added 2026-03-05 13:03:17 +00:00
Joe Knapper
84f3032022 Update docstrings to explain lower brightness 2026-03-04 20:52:49 +00:00
jaknapper
e324014a81 Increase target exposure to 40% 2026-03-04 20:52:49 +00:00
Joe Knapper
75ca73f148 Decrease target brightness for both cameras as its pre-gamma 2026-03-04 20:52:49 +00:00
Julian Stirling
7e4ec53d78 Update how the application configuration is read for LabThings 0.0.17 2026-03-04 17:22:03 +00:00