jaknapper
a4801ad861
Update camera thing to match upstream
2025-05-07 19:52:21 +01:00
jaknapper
6cf99d5096
Stack settings in GUI
2025-05-07 19:52:21 +01:00
jaknapper
f50580cdd0
Give sharpness monitor a descriptive name, not m
2025-05-07 19:52:20 +01:00
jaknapper
bf6437b42c
Renaming z_stack features for clarity, docstring on AutofocusThing
2025-05-07 19:52:20 +01:00
jaknapper
9f39f61d03
Stacking in autofocus with temp capture Thing
2025-05-07 19:52:18 +01:00
jaknapper
dee11deec1
New capturing Thing
2025-05-07 19:51:57 +01:00
jaknapper
9b2ccea660
Don't move further after the final image of the stack
2025-05-07 19:51:57 +01:00
jaknapper
ade713b6d0
Create a stack folder and copy the middle image to image_dir
2025-05-07 19:51:57 +01:00
jaknapper
0b7a817674
Ruff formatting and removing all capturing from smart_scan
2025-05-07 19:51:55 +01:00
jaknapper
1f3211e3ee
Functional z stack Thing
2025-05-07 19:49:52 +01:00
Joe Knapper
fe5db1a0f5
Merge branch 'image_count' into 'v3'
...
Regex to count captured images
Closes #306
See merge request openflexure/openflexure-microscope-server!253
2025-05-07 13:53:37 +00:00
Joe Knapper
88f72caed5
Merge branch 'thumbnails-in-scan-tab' into 'v3'
...
Thumbnails and accurate durations in scan-list tab
See merge request openflexure/openflexure-microscope-server!250
2025-05-07 13:53:34 +00:00
jaknapper
f5265b262e
Regex as global
2025-05-07 11:26:49 +01:00
jaknapper
30ff796833
Regex to count captured images
2025-05-07 11:09:29 +01:00
Joe Knapper
a1be3e518f
Apply 2 suggestion(s) to 1 file(s)
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-05-01 14:14:34 +00:00
jaknapper
fbbb3decdc
Ruff formatting
2025-05-01 13:16:48 +00:00
jaknapper
b8ddab1ed8
Remove correlation only stitching, now covered by preview stitch
2025-05-01 13:16:48 +00:00
jaknapper
5ca4c824aa
Remove producing thumbnail (to be added to stitching repo)
2025-04-23 14:28:41 +01:00
Julian Stirling
3adc34c30b
Merge branch 'dont-test-focus-change' into 'v3'
...
Remove focus_change_acceptable test
Closes #342
See merge request openflexure/openflexure-microscope-server!249
2025-04-23 11:28:05 +00:00
Joe Knapper
c4dc357cf3
Apply 1 suggestion(s) to 1 file(s)
...
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
2025-04-23 10:57:56 +00:00
Joe Knapper
283a10c560
Always move back to expected focus after failed autofocus
2025-04-23 09:15:54 +00:00
jaknapper
91057f164a
Thumbnails and accurate durations in scan-list tab
2025-04-22 19:02:29 +01:00
jaknapper
3bcc71304e
Fixed focused path tracking, move to estimated focus before autofocus
2025-04-22 14:33:27 +01:00
jaknapper
7cb1a3980e
Remove focus_change_acceptable test, autofocus from centre
2025-04-17 17:20:40 +01:00
jaknapper
5d8a1073b2
Remove focus_change_acceptable
2025-04-17 17:02:39 +01:00
jaknapper
2741123cf9
Looping autofocus at the start of the scan
2025-04-16 18:47:47 +01:00
Julian Stirling
06632f195e
Spelling corrections and docstring improvements
...
Co-authored by Joe Knapper <jaknapper@hotmail.com>
2025-04-14 15:46:27 +00:00
Julian Stirling
7f46bc2d9b
Fixing capture_thread variable and autofocus logic
2025-04-14 11:27:25 +01:00
Julian Stirling
1f66e8bc7a
Enormous refactor of the scan code, was hard to find an intermediate working place to commit
2025-04-14 11:27:25 +01:00
Julian Stirling
cddb49c9f7
Clean up code as I remove bare excepts
2025-04-14 11:27:25 +01:00
Julian Stirling
2c171026be
Still tidying the start end end of the scan code
2025-04-14 11:27:25 +01:00
Julian Stirling
797f3bcb60
Collecting scan parameters into dictionary that will become a dataclass
2025-04-14 11:27:25 +01:00
Julian Stirling
7665d45e09
Make the coverage report touch all files
2025-04-11 23:29:32 +01:00
Julian Stirling
1c871749b0
Remove module level noqa from background detect.
2025-04-11 12:32:32 +01:00
Julian Stirling
4eeff35e2d
Fixes to naming to make basic lint checks pass
2025-04-11 12:29:14 +01:00
Julian Stirling
b7c472bb24
fix comment on number of zeros padding the scan name
2025-04-10 22:39:22 +01:00
Julian Stirling
31c768c12a
Move @_scan_running decorator out of class and tidy as suggested in review
2025-04-10 22:14:56 +01:00
Julian Stirling
e030eb576b
Add @scan_running decorator for scans to try to access to the scan logger for methods not called by the scan
2025-04-10 17:52:12 +01:00
Julian Stirling
26e265f026
Fixes from review (mostly spellings)
...
Co authored by:
* Joe Knapper <jaknapper@hotmail.com>
* Beth Probert <beth_probert@outlook.com>
2025-04-10 16:35:49 +00:00
Julian Stirling
840c527cc2
Remove unused Stitching Thing
2025-04-10 13:53:51 +01:00
Julian Stirling
a5d55c95b8
Further tidying of scan directory variables
2025-04-10 13:24:11 +01:00
Julian Stirling
90cfce146d
Fix default scan name
2025-04-10 11:46:16 +01:00
Julian Stirling
040373ef88
Run check background aonly fter scan variables are stored
2025-04-10 11:45:57 +01:00
Julian Stirling
83d2930d1f
Fix capture error handing
...
The error handling for capture needs to still send the aquired event
or it will lock forever. On getting the errors to work there
were some other minor issues in how the errors were called.
2025-04-09 23:52:47 +01:00
Julian Stirling
70e7a21a29
Starting to refactor smart scan to rely on class variables
2025-04-09 22:55:35 +01:00
Julian Stirling
ff1184d453
Handle errors in capture thread
2025-04-09 22:45:18 +01:00
Joe Knapper
1d5d67f35a
Split out background detect into a new file
2025-04-09 17:25:19 +01:00
Joe Knapper
f4db9b6e52
Removed commented out code and unused functions
2025-04-09 15:32:13 +01:00
jaknapper
a5d1f1e965
Removed commented out code
2025-04-09 15:11:26 +01:00
jaknapper
e28a160b22
Ruff formatting adding commas
2025-04-09 14:59:20 +01:00
