rahix/openflexure-microscope-server
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235 commits

Author SHA1 Message Date
jaknapper
c2d8160ff4 Smart Scan metadata containing scan name if scan is running 2025-10-23 10:40:56 +01:00
Joe Knapper
fa6fdb1a67 Stack parameter coercion in create_stack_params 
Co-authored with Julian Stirling
 2025-10-09 14:23:47 +01:00
jaknapper
18e49ba50c Test stack params at start of scan main loop 2025-10-09 14:22:37 +01:00
Julian Stirling
4345f8c336 Merge branch 'tweak-scan-list' into 'v3' 
Scan list improvements

Closes #391

See merge request openflexure/openflexure-microscope-server!397
 2025-09-29 08:55:13 +00:00
Julian Stirling
14cc3f9fcf Fix error trying to purge empty scans if current scan has no images 
Closes #563
 2025-09-25 15:12:34 +01:00
Julian Stirling
cd6bcd196f Don't show buttons for ongoing scans. 2025-09-19 18:29:34 +01:00
Julian Stirling
6b1e40f689 Add flake8-simplicity rules 2025-09-18 16:21:45 +01:00
Julian Stirling
2ce49088e7 Add return typehints to magic methods 2025-08-27 18:56:09 +01:00
Julian Stirling
4c46330959 Add ANN20X rules to ruff 2025-08-27 18:56:08 +01:00
Julian Stirling
24233412af Start adding ANN ruff rules 2025-08-27 18:54:15 +01:00
Julian Stirling
6fa4e4dc64 Add a grab_as_array camera method that grabs from the stream but catches broken jpegs and retries 2025-08-21 13:35:21 +01:00
Joe Knapper
bd115e0023 Change all CameraDeps to CameraClients 2025-08-15 10:16:36 +00:00
Julian Stirling
05644456e0 Allow preview to cancel! 2025-08-12 16:41:55 +01:00
Julian Stirling
cd311f08bf Update stiching to differentiate bwtween stitchers that use a thread and those that block 2025-08-06 17:47:33 +01:00
Julian Stirling
5f092835ac Apply suggestions from code review of branch yet-another-smart-scan-refactor 2025-08-06 17:27:26 +01:00
Julian Stirling
2e6ba73345 Apply suggestions from code review of branch yet-another-smart-scan-refactor 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2025-08-06 17:27:26 +01:00
Julian Stirling
f9fcdf628b Squash final todos for SmartScan refactor 2025-08-06 17:27:26 +01:00
Julian Stirling
7d83aadf8d Squash some TODOs 2025-08-06 17:27:26 +01:00
Julian Stirling
4e9b07c78f Consolidate information into ScanData, remove ad-hoc differences for specific error in _run_scan 2025-08-06 17:27:26 +01:00
Julian Stirling
82691a6b78 Tweak error reporting in _run_scan and add a lot more testing for _run_scan 2025-08-06 17:27:26 +01:00
Julian Stirling
d7a7ac4c7d More complete testing of code that runs stitching subprocess. 2025-08-06 17:27:26 +01:00
Julian Stirling
573fc20dec Add new tests new scan directory function and for scan data serialisation 2025-08-06 17:27:26 +01:00
Julian Stirling
6ceb1a9845 Pull stitching out of SmartScanThing 2025-08-06 17:27:26 +01:00
Julian Stirling
f449bcdd78 Turn scan_data into a BaseModel with validation for custom formatting 2025-08-06 17:27:26 +01:00
Julian Stirling
9be9097246 Make scan directory manager thread safe 2025-08-05 23:13:11 +01:00
Julian Stirling
547704fdc0 Merge branch 'bg_detect_in_camera' into 'v3' 
Refactor background detect to allow switching algorithms

See merge request openflexure/openflexure-microscope-server!327
 2025-07-28 09:21:43 +00:00
Joe Knapper
d6f1502593 Apply suggestions from code review of branch Stitch-all 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-07-25 16:42:27 +00:00
jaknapper
7ac77c3e89 Stitch all scans button, and refresh scan tab when closing modals 2025-07-25 16:52:37 +01:00
Julian Stirling
75bdae5593 Fix message formatting and dosctring syntax 2025-07-24 17:54:58 +01:00
Julian Stirling
fe1b84a922 Complete first pass (untested on hardware) of bg detect refactor. 2025-07-24 17:07:50 +01:00
Julian Stirling
2245d9357d Continue to rebase background detect. 2025-07-24 17:07:50 +01:00
Julian Stirling
7e6017f648 Get codespell passing and add it as a CI job. 2025-07-11 00:16:25 +01:00
Julian Stirling
e33fecaef0 Documentation of python magic class methods 2025-07-10 16:46:10 +01:00
Julian Stirling
a30b726b91 Class docstrings 2025-07-10 13:27:41 +01:00
Julian Stirling
11a1fd7f85 Move ThingSetting and ThingProperty docstrings under the definition. 2025-07-10 10:43:05 +01:00
Julian Stirling
2cb4003835 Add module level docstrings. 2025-07-10 09:24:50 +01:00
Julian Stirling
80beeea07b Add punctuation to docstrings 2025-07-10 09:24:50 +01:00
Julian Stirling
4dc41bb008 Single line summaries of docstrings 2025-07-10 09:24:49 +01:00
Julian Stirling
35d47fe3ed Starting docstring on the same lines as the quotations 2025-07-10 09:24:49 +01:00
Julian Stirling
f51dae7b3a Doc strings to imperative mood 2025-07-10 09:24:49 +01:00
Julian Stirling
a84a916719 Restructured text fixes so that pydoctor would return without an error 2025-07-09 23:59:08 +01:00
Julian Stirling
52a80ef66b And adjust for new as lt import 2025-07-07 15:25:14 +01:00
Julian Stirling
840ed7f20e Update Thing Settings to use the new format provided by PR #110 of Labthings FastAPI 2025-07-07 15:24:30 +01:00
Julian Stirling
e7cf0c3f24 Allow stiching to be cancelled after a scan complete 
Closes #417
 2025-07-02 18:13:48 +01:00
Julian Stirling
254305a7a5 Clarify whether name or path is returned in scan directory functions 2025-07-01 19:21:56 +01:00
jaknapper
ff43deae36 Download stitched image of scan (if present) 
* Docstring for download stitch
* use global STITCH_SUFFIX
 2025-06-30 20:18:48 +01:00
Julian Stirling
51f9df995d More changes suggested in review, generally docstring issues. 2025-06-30 17:25:58 +01:00
Julian Stirling
ad838e8643 Apply suggestions from code review of branch split-scan-dir-operations 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-30 17:25:58 +01:00
Julian Stirling
7193ec34f5 Starting to test more smart scan functionality using mocked Thing Dependencies 2025-06-27 21:06:16 +01:00
Julian Stirling
1267d881b9 Start writing tests for smart scan 
Focusing on methods that don't start the whole scan.
 2025-06-27 21:06:16 +01:00