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175 commits

Author SHA1 Message Date
Julian Stirling
94541b2d4f Merge branch 'stack-height-sanitise' into 'v3' 
Verify stack params at start of scan main loop

Closes #455

See merge request openflexure/openflexure-microscope-server!400
 2025-10-09 14:00:59 +00:00
Joe Knapper
089beae01a Tests for coercing stack params to valid values. 
Co-authored with Julian Stirling
 2025-10-09 14:26:01 +01:00
Joe Knapper
dae5b816cc Merge branch 'sample-size-sim' into 'v3' 
Simulate a rectangular sample

Closes #516

See merge request openflexure/openflexure-microscope-server!401
 2025-10-07 10:09:37 +00:00
Joe Knapper
2fc92fc1ff Test sample and canvas size 2025-10-02 13:56:08 +01:00
Joe Knapper
bfe0064ce8 Update dummy test and fix sample coords 2025-09-25 16:14:13 +01:00
Julian Stirling
91c4fb22db Remove checks that purge empty scans is run in run_scan as it has moved 2025-09-25 15:16:23 +01:00
Joe Knapper
0e5517d45c Fix another hardcoded linux test 2025-09-25 12:04:39 +01:00
Julian Stirling
b9ca8b3094 Apply suggestions from code review of branch Increased-linting 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-09-19 10:16:47 +00:00
Julian Stirling
6b1e40f689 Add flake8-simplicity rules 2025-09-18 16:21:45 +01:00
Julian Stirling
d7d1f42b2c Enable PyTest ruff checks 2025-09-18 16:21:45 +01:00
Julian Stirling
9c20c18230 Remove mock for loading tuning file during test as it no longer needs to talk to hardware. 2025-09-18 13:00:46 +01:00
Julian Stirling
24233412af Start adding ANN ruff rules 2025-08-27 18:54:15 +01:00
Julian Stirling
2325dced5e Merge branch 'test-server-startup' into 'v3' 
Test server startup

See merge request openflexure/openflexure-microscope-server!379
 2025-08-27 16:11:34 +00:00
Julian Stirling
4af4e89c0a Merge branch 'no-uvicorn.error-logs-without-error' into 'v3' 
Stop reporting uvicorn.error in log file unless log it is an error

Closes #511

See merge request openflexure/openflexure-microscope-server!375
 2025-08-27 14:30:11 +00:00
Julian Stirling
5515d55e6d Merge branch 'error-types' into 'v3' 
Tweak a few error types.

Closes #320

See merge request openflexure/openflexure-microscope-server!376
 2025-08-27 13:47:26 +00:00
Julian Stirling
353d311c1e Apply suggestions from code review of branch no-uvicorn.error-logs-without-error 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-08-27 13:24:37 +00:00
Julian Stirling
2d89cdd3a3 Add tests for the legacy api 2025-08-24 20:45:55 +01:00
Julian Stirling
e53f4e3b2b Remove the conftest defined fixtures as mock methods return mocks already removing the need for the defined mocks 2025-08-24 19:22:19 +01:00
Julian Stirling
867cd0cad1 Add further server setup tests splitting up configuration testing from CLI 2025-08-24 19:11:03 +01:00
Julian Stirling
405299b221 Test server configuration helper functions 2025-08-22 23:11:27 +01:00
Julian Stirling
d5e2a48f32 Fix tests to catch correct error types 2025-08-21 16:21:09 +01:00
Julian Stirling
3529c96ec6 Stop reporting uvicorn.error in log file unless log it is an error 2025-08-21 15:40:27 +01:00
Julian Stirling
6fa4e4dc64 Add a grab_as_array camera method that grabs from the stream but catches broken jpegs and retries 2025-08-21 13:35:21 +01:00
Julian Stirling
347247f45b Add unit tests that simulates broken frames and catches the correct error. 2025-08-21 13:35:21 +01:00
Julian Stirling
3289221c6b Add unit tests for all of serving static files. Update docs in src to clarify behaviour 2025-08-15 11:01:43 +01:00
Julian Stirling
db41d673fb Add tests for static directory checking 2025-08-15 09:21:38 +01:00
Julian Stirling
bfdbbb9ad2 Merge branch 'request-no-cache' into 'v3' 
Request no cache

See merge request openflexure/openflexure-microscope-server!361
 2025-08-14 19:59:58 +00:00
Julian Stirling
67ebb94d6c Add tests for not caching static files except fonts 2025-08-14 14:46:23 +01:00
Julian Stirling
af93db7de8 Merge branch 'let-preview-stitch-cancel' into 'v3' 
Allow preview to cancel!

See merge request openflexure/openflexure-microscope-server!359
 2025-08-13 15:18:13 +00:00
Julian Stirling
c066843f9b Test cancelling preview 2025-08-12 16:42:15 +01:00
Julian Stirling
59224fe726 Remove unneded eumerates 2025-08-12 15:15:02 +01:00
Julian Stirling
6142a267db Add flake8 bugbear checks 2025-08-12 13:09:43 +01:00
Julian Stirling
058f890c61 Update version numbers for v3 alpha2 release 2025-08-08 11:58:14 +01:00
Julian Stirling
3d7438ed2b Merge branch 'stitch-tile-size' into 'v3' 
Update to stitching 0.2

See merge request openflexure/openflexure-microscope-server!352
 2025-08-08 10:29:43 +00:00
jaknapper
f9f28b3500 Update tests 2025-08-08 10:44:03 +01:00
Julian Stirling
3a4b99df55 Apply suggestions from code review of branch faster-stage-tests 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-08-08 09:32:31 +00:00
Julian Stirling
90dbb35a9e Directly call DummyStage instance during movement test for speed 2025-08-08 09:52:23 +01:00
Julian Stirling
dbdf254154 Fix CLI arg for FinalStitcher, and a docstring typo. 2025-08-07 15:20:14 +01:00
Julian Stirling
5caae613dc Apply suggestions from code review of branch yet-another-smart-scan-refactor 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-08-07 13:55:47 +00:00
Julian Stirling
cd311f08bf Update stiching to differentiate bwtween stitchers that use a thread and those that block 2025-08-06 17:47:33 +01:00
Julian Stirling
f9fcdf628b Squash final todos for SmartScan refactor 2025-08-06 17:27:26 +01:00
Julian Stirling
4e9b07c78f Consolidate information into ScanData, remove ad-hoc differences for specific error in _run_scan 2025-08-06 17:27:26 +01:00
Julian Stirling
82691a6b78 Tweak error reporting in _run_scan and add a lot more testing for _run_scan 2025-08-06 17:27:26 +01:00
Julian Stirling
d7a7ac4c7d More complete testing of code that runs stitching subprocess. 2025-08-06 17:27:26 +01:00
Julian Stirling
cf74ea1351 More complete testing of code that runs stitching subprocess. 2025-08-06 17:27:26 +01:00
Julian Stirling
7569c7d6b2 Add validation checks to prevent arbitrary code execution via stitching. 2025-08-06 17:27:26 +01:00
Julian Stirling
a632ddee92 Add unit tests for generated stitching commands. 2025-08-06 17:27:26 +01:00
Julian Stirling
573fc20dec Add new tests new scan directory function and for scan data serialisation 2025-08-06 17:27:26 +01:00
Julian Stirling
73beb2b09d Merge branch 'fix-movements' into 'v3' 
Fix movements axes

Closes #498

See merge request openflexure/openflexure-microscope-server!338
 2025-08-06 15:50:08 +00:00
Julian Stirling
cbd2f9e0e3 Add check that _lock is a lock in requires_lock 2025-08-05 23:13:11 +01:00