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407 commits

Author SHA1 Message Date
Julian Stirling
c8e87577cb Add tests for new system Thing. 2025-07-15 00:14:07 +01:00
Julian Stirling
e3146f1798 Apply suggestions from code review of branch merge-settings-and-system-control 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-07-14 21:32:17 +00:00
Julian Stirling
9369b2988d Shutdown button terminates server in simulation. Adjust power tab layout 2025-07-14 18:57:36 +01:00
Julian Stirling
be94df7c8a Merge SettingsManager and SystemControl Things. 2025-07-14 17:59:46 +01:00
Julian Stirling
bed59c051b Merge branch 'update-setting-manager' into 'v3' 
Update setting manager

Closes #477, #343, and #475

See merge request openflexure/openflexure-microscope-server!321
 2025-07-14 16:47:41 +00:00
Julian Stirling
608c4bd16f Expose version as thing property and via thing state so it ends up in metadata. 2025-07-14 17:11:53 +01:00
Julian Stirling
d19d44ba4f Remove unused complex functionality from settings_manager.py. 2025-07-14 17:11:53 +01:00
Julian Stirling
59a5246904 Apply suggestions from code review of branch simplify-csm-interface 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2025-07-14 15:33:50 +00:00
Julian Stirling
705cf73173 Fixing docstrings for camera stage mapping changes. 2025-07-13 23:53:44 +01:00
Julian Stirling
531e5c27b2 Replace LoggingMoveWrapper with RecordedMove accepts a stage rather than an arbitrary move function 
This was needed to get the correct key word arguments
 2025-07-13 23:34:55 +01:00
Julian Stirling
b89449be77 Add camera-stage-mapping compliant functions to BaseStage and BaseCamera. 2025-07-13 21:55:55 +01:00
Julian Stirling
c68f0515f5 Apply suggestions from code review of branch better-docstrings 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-07-11 07:26:26 +00:00
Julian Stirling
f91582c9eb Apply suggestions from code review of branch better-docstrings 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-07-10 23:31:34 +00:00
Julian Stirling
7e6017f648 Get codespell passing and add it as a CI job. 2025-07-11 00:16:25 +01:00
Julian Stirling
e33fecaef0 Documentation of python magic class methods 2025-07-10 16:46:10 +01:00
Julian Stirling
864ca91e5c Add docstrings to all public package 2025-07-10 15:29:10 +01:00
Julian Stirling
14359e73bb Add public method docstrings. 2025-07-10 15:12:28 +01:00
Julian Stirling
1bbbfeef0f Add docstrings to public methods 2025-07-10 14:04:48 +01:00
Julian Stirling
a30b726b91 Class docstrings 2025-07-10 13:27:41 +01:00
Julian Stirling
11a1fd7f85 Move ThingSetting and ThingProperty docstrings under the definition. 2025-07-10 10:43:05 +01:00
Julian Stirling
2cb4003835 Add module level docstrings. 2025-07-10 09:24:50 +01:00
Julian Stirling
80beeea07b Add punctuation to docstrings 2025-07-10 09:24:50 +01:00
Julian Stirling
4dc41bb008 Single line summaries of docstrings 2025-07-10 09:24:49 +01:00
Julian Stirling
35d47fe3ed Starting docstring on the same lines as the quotations 2025-07-10 09:24:49 +01:00
Julian Stirling
be6a6ca6fe No starting docstrings with This 2025-07-10 09:24:49 +01:00
Julian Stirling
f51dae7b3a Doc strings to imperative mood 2025-07-10 09:24:49 +01:00
Julian Stirling
a84a916719 Restructured text fixes so that pydoctor would return without an error 2025-07-09 23:59:08 +01:00
Julian Stirling
d9fd54696a Monkey patch Uvicorn's handle_exit function to stop streams 
Before the uvicorn handle_exit function is called kill the camera
streams.
 2025-07-09 16:53:08 +01:00
Julian Stirling
421efa2866 Pass blocking portal to mjpeg_stream.stop() 
This was updated in LabThings-FastAPI v0.0.10, but wasn't changed
as we moved over.
 2025-07-09 16:53:08 +01:00
Julian Stirling
a8323c4f58 Remove section of docstring that no longer applies 2025-07-07 17:58:23 +00:00
Julian Stirling
35d6e45892 Refactor and simplify how picamera settings work 2025-07-07 15:25:16 +01:00
Julian Stirling
df8a9d0e93 Renaming picamera context manager to make it clear it is different from using the picamera itself as a context manager 2025-07-07 15:25:16 +01:00
Julian Stirling
52a80ef66b And adjust for new as lt import 2025-07-07 15:25:14 +01:00
Julian Stirling
840ed7f20e Update Thing Settings to use the new format provided by PR #110 of Labthings FastAPI 2025-07-07 15:24:30 +01:00
Julian Stirling
a0065931e4 Merge branch 'include-sangaboard' into 'v3' 
Move SangaboardThing into repo

See merge request openflexure/openflexure-microscope-server!311
 2025-07-03 14:27:38 +00:00
Julian Stirling
544ede0bf9 Apply suggestions from code review of branch include-sangaboard 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-07-03 14:57:48 +01:00
Julian Stirling
222a0c973d Remove old sangaboard abort_move action as moves are not cancelled with a cancel hook 2025-07-03 13:16:25 +01:00
Julian Stirling
e7cf0c3f24 Allow stiching to be cancelled after a scan complete 
Closes #417
 2025-07-02 18:13:48 +01:00
Julian Stirling
5e6aeb9bbf Move SangaboardThing into repo 2025-07-02 16:42:38 +01:00
Julian Stirling
ffd958f823 Remove test Thing that is is never used. 2025-07-02 14:33:23 +01:00
Julian Stirling
254305a7a5 Clarify whether name or path is returned in scan directory functions 2025-07-01 19:21:56 +01:00
jaknapper
ff43deae36 Download stitched image of scan (if present) 
* Docstring for download stitch
* use global STITCH_SUFFIX
 2025-06-30 20:18:48 +01:00
Julian Stirling
51f9df995d More changes suggested in review, generally docstring issues. 2025-06-30 17:25:58 +01:00
Julian Stirling
ad838e8643 Apply suggestions from code review of branch split-scan-dir-operations 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-30 17:25:58 +01:00
Julian Stirling
7193ec34f5 Starting to test more smart scan functionality using mocked Thing Dependencies 2025-06-27 21:06:16 +01:00
Julian Stirling
1267d881b9 Start writing tests for smart scan 
Focusing on methods that don't start the whole scan.
 2025-06-27 21:06:16 +01:00
Julian Stirling
32f78a4cff Trying to make a distinction between file directory operations for scans and scanning code 
This started as a small change and spiralled out of control it needs good unit tests and testing
before considering to merge
 2025-06-27 21:06:16 +01:00
Julian Stirling
0d2f324324 Split creation of scan directory information into class with small testable methods 2025-06-27 21:06:16 +01:00
Julian Stirling
8002600fcf Apply suggestions from code review of branch fast-stack 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2025-06-27 16:40:18 +00:00
Julian Stirling
9a92fd478a Final docstring and testing updates based on code review 2025-06-27 16:54:28 +01:00