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371 commits

Author SHA1 Message Date
Julian Stirling
85ebfef44a Improve and test html sanitisation 2026-03-10 15:25:37 +00:00
Julian Stirling
88da4a18d9 Update unit tests 2026-03-10 15:25:37 +00:00
Beth Probert
6d66dd0ed8 Change make_path_safe to is_path_safe and update tests to reflect this 2026-03-09 15:45:32 +00:00
Beth Probert
3776828699 Fix final typo 2026-03-09 14:52:23 +00:00
Beth Probert
ada7585706 Fix typos 2026-03-09 14:40:51 +00:00
Beth Probert
b1d47c8aae Add final test case for path checking 2026-03-09 14:09:00 +00:00
Beth Probert
968237bec0 Ruff checks 2026-03-09 14:02:15 +00:00
Beth Probert
f67699fbc8 Raise warnings if there are unsafe file path elements rather than coercing file paths. Stitching still raises an error if your file name is unsafe 2026-03-09 13:54:43 +00:00
Beth Probert
349485d43b Remove multi-underscores from allowed names 2026-03-06 15:52:50 +00:00
Beth Probert
2c2f97cb56 Force file names to be lower case to avoid Windows issues around case sensitivity when checking if a file already exists. Path names can be uppercase as these will be defined on a users system and pre-exist. Files are created by us so we can force sanitation 2026-03-06 15:37:01 +00:00
Beth Probert
35f7adcf07 Codespell 2026-03-06 14:16:42 +00:00
Beth Probert
4395d4001c Allow relative imports with two dots at start of path. Update unit tests. 2026-03-06 14:13:00 +00:00
Beth Probert
e5429d6cda Change make_path_safe to allow single dot relative imports, but no dots anywhere else. Added new unit tests for this. 2026-03-06 14:07:07 +00:00
Beth Probert
713df248ff Add underscores to fix unit test 2026-03-06 09:53:41 +00:00
Beth Probert
7a17c92d3e Apply suggestions from code review of branch 523-improve-validation-checks 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-03-05 15:13:42 +00:00
Beth Probert
f52ce85b3e Ruff formatting 2026-03-05 14:04:33 +00:00
Beth Probert
35efba19b8 Use pytest parametrize for better coverage of forbidden commands and reserved names 2026-03-05 13:55:05 +00:00
Beth Probert
fa9ea77812 Ruff check 2026-03-05 13:42:55 +00:00
Beth Probert
48f6e1b369 Allow python and python3 as stitching commands. They are allowed. Move stitching tests into one file 2026-03-05 13:35:21 +00:00
Beth Probert
98e71207c5 Add forbidden windows commands to stitching and utilities to check for file name sanitation. Unit tests also added 2026-03-05 13:03:17 +00:00
Julian Stirling
ec27b7d5c5 Update integration tests for application_config 2026-03-04 17:22:03 +00:00
Julian Stirling
7e4ec53d78 Update how the application configuration is read for LabThings 0.0.17 2026-03-04 17:22:03 +00:00
Julian Stirling
45903f92a6 Create and mount application level data direcory rather than just a scan directory 2026-03-04 17:22:03 +00:00
jaknapper
9a6f80edf4 Update camera_test with extra key 2026-03-03 14:45:32 +00:00
jaknapper
0173cf912f Add gamma_curve to metadata 2026-03-03 13:59:43 +00:00
Joe Knapper
5019884175 Camera metadata includes subclass name, and test 2026-03-03 13:23:30 +00:00
Julian Stirling
ac9852a7ad Merge branch 'less-stack-coersion' into 'v3' 
Do less coersion for stacks now labthings validates settings.

See merge request openflexure/openflexure-microscope-server!516
 2026-03-03 10:02:05 +00:00
Julian Stirling
0fdcb9b623 Merge branch 'equal-offsets' into 'v3' 
Allow histo scans with equal dx and dy

See merge request openflexure/openflexure-microscope-server!517
 2026-03-02 22:56:53 +00:00
Joe Knapper
c09164a4e3 Apply suggestions from code review of branch equal-offsets 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-03-02 20:47:12 +00:00
Joe Knapper
7d3427ad2a Test equal overlaps 2026-03-02 19:31:04 +00:00
Julian Stirling
d7b4457a55 Do less coersion for stacks now labthings validates settings. 2026-03-02 18:19:11 +00:00
Julian Stirling
d4fbcb6d61 Apply suggestions from code review of branch backlash-in-stage 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2026-03-02 14:40:27 +00:00
Julian Stirling
0527990282 Use backlash compensation in smart scan and autofocus 2026-03-02 14:40:25 +00:00
Julian Stirling
c12814f0eb Add a load more backlash corrected move test cases. 2026-03-02 14:37:21 +00:00
Julian Stirling
c2b784e606 Add stage backlash correction 2026-03-02 14:37:21 +00:00
Julian Stirling
35819aa826 Track the backlash state of stages 2026-03-02 14:37:21 +00:00
Julian Stirling
2ae4f832bf Simplify setting model validation 2026-02-25 19:15:59 +00:00
Joe Knapper
63338f8ea0 From feedback 2026-02-25 19:15:59 +00:00
jaknapper
b211cfd4c5 Validate and test stack inputs 
Update picamera hardware test
 2026-02-25 19:15:56 +00:00
Joe Knapper
78b407fb43 Apply suggestions from code review of branch scan-params 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2026-02-25 19:14:15 +00:00
jaknapper
565204da59 Remove unneeded moves from basic stack 
Update tests with better comments

Test a stack with both backlash compensation and offset
 2026-02-25 19:14:15 +00:00
jaknapper
c28afe30ab Optional args, kwargs in pytest fixtures 2026-02-25 19:14:15 +00:00
jaknapper
294dd33bc0 Add tests for basicstack 2026-02-25 19:14:15 +00:00
Joe Knapper
a5b77cc2a3 Add settings to test_scan_workflows 2026-02-25 19:14:15 +00:00
Joe Knapper
67e43c90df Update histo_scan fixture with dummy settings 2026-02-25 19:14:15 +00:00
Joe Knapper
e750129de2 Initial commit, splitting params into focus, capture, stack 2026-02-25 19:14:15 +00:00
Joe Knapper
d7a27ee82f Apply suggestions from code review of branch scan-logs 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-02-23 13:45:02 +00:00
Julian Stirling
6db4e9394c Write tests for things getting their invocation logs 2026-02-23 11:35:04 +00:00
Julian Stirling
e5c490e295 Move tests for thing selector into a more generic file for testin thing utilities 2026-02-23 11:35:04 +00:00
Julian Stirling
882414596d Fix smart scan tests 2026-02-23 11:35:04 +00:00