jaknapper
|
26163dc97e
|
Added a new way to capture full res JPEGs, need to do a comparison of results
|
2025-06-23 11:17:45 +01:00 |
|
jaknapper
|
ab33de7ccd
|
Capture a jpeg to disk
|
2025-06-23 11:17:45 +01:00 |
|
jaknapper
|
d8878e40da
|
Stacking in autofocus with temp capture Thing
|
2025-06-23 11:17:45 +01:00 |
|
jaknapper
|
46458ca8a1
|
Create a stack folder and copy the middle image to image_dir
|
2025-06-23 11:17:45 +01:00 |
|
jaknapper
|
a1784941fe
|
Ruff formatting and removing all capturing from smart_scan
|
2025-06-23 11:17:45 +01:00 |
|
jaknapper
|
603b9c7d16
|
Functional z stack Thing
|
2025-06-23 11:17:45 +01:00 |
|
Joe Knapper
|
d1ed7ec797
|
Apply suggestions from code review of branch fast-stack
|
2025-06-20 11:26:58 +00:00 |
|
Joe Knapper
|
006d3b2a7b
|
Apply suggestions from code review of branch fast-stack
Co-authored-by: Beth Probert <beth_probert@outlook.com>
|
2025-06-20 11:23:14 +00:00 |
|
jaknapper
|
ce33b94aab
|
Capture as a Raw dependency to use methods that aren't actions
|
2025-06-20 12:19:07 +01:00 |
|
jaknapper
|
6cf2f4d8c3
|
Typehints and docstrings in z_stack
|
2025-06-19 14:58:16 +01:00 |
|
jaknapper
|
6acfbaefd6
|
Split up z stack function
|
2025-06-18 18:36:21 +01:00 |
|
jaknapper
|
e8c4103bb0
|
Remove unneeded logging
|
2025-06-17 14:34:42 +01:00 |
|
jaknapper
|
f363ec0eff
|
Docstring for test_stack
|
2025-06-17 14:34:42 +01:00 |
|
jaknapper
|
dbb65d55b5
|
Use scan autofocus dz
|
2025-06-17 14:34:42 +01:00 |
|
jaknapper
|
cdd603d751
|
Capture the full stack requested
|
2025-06-17 14:34:42 +01:00 |
|
jaknapper
|
0671f2d1be
|
Backlash correction as global, more comments
|
2025-06-17 14:34:42 +01:00 |
|
jaknapper
|
712f524414
|
Looping autofocus on failed smart stack
|
2025-06-17 14:34:42 +01:00 |
|
jaknapper
|
3e164102f6
|
A stack that tests whether the sharpest image is towards the middle
|
2025-06-17 14:34:42 +01:00 |
|
Julian Stirling
|
1c54d25212
|
Add ruff checking for unnecessary comprehensions
|
2025-06-10 16:07:49 +01:00 |
|
Julian Stirling
|
2050c2dc7c
|
Add return checker, needed 4 fixes
|
2025-06-10 16:07:48 +01:00 |
|
Julian Stirling
|
3f0564f253
|
Turning on more lint checkers, warning for cameras that ignore resolution setting
|
2025-06-10 16:07:48 +01:00 |
|
Joe Knapper
|
ae2ec1864f
|
Merge branch 'config-scan-dir' into 'v3'
Add scan directory to json config
Closes #393
See merge request openflexure/openflexure-microscope-server!283
|
2025-06-09 13:42:27 +00:00 |
|
Chish36
|
7eed48ed26
|
Swapped the order of CSM so y axis is completed first
|
2025-06-09 13:39:06 +00:00 |
|
Julian Stirling
|
b45f5651ab
|
Add scan directory to json config
|
2025-06-06 12:21:51 +01:00 |
|
Joe Knapper
|
08d1371569
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-06-06 10:25:34 +00:00 |
|
Joe Knapper
|
69db7b4041
|
Apply 2 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-06-05 17:09:37 +00:00 |
|
Joe Knapper
|
41f6c8879a
|
RATIO as a global, better naming and splitting of generate_image()
|
2025-06-05 15:03:26 +01:00 |
|
Joe Knapper
|
2db895a1fc
|
Defocus and realign simulation axes
|
2025-06-05 12:09:01 +01:00 |
|
jaknapper
|
a499d9230c
|
Switch to updated "preview stitch" mode in stitching
|
2025-05-23 16:28:22 +01:00 |
|
jaknapper
|
cc3620d2ed
|
Stitch with dzi by default, and check for dzi available in scans()
|
2025-05-23 16:28:21 +01:00 |
|
Julian Stirling
|
fe1696df28
|
Fix error in purge_empty_scans if the images dir hadn't been created
|
2025-05-23 12:49:46 +01:00 |
|
Julian Stirling
|
70f4304b2e
|
Fix bug where .jpg files are not counted in scan list (only .jpeg)
|
2025-05-23 11:45:26 +01:00 |
|
jaknapper
|
b812c6be35
|
Settling time as global, settle before taking first image in stack
|
2025-05-21 15:41:49 +01:00 |
|
Julian Stirling
|
6332c8b647
|
Merge branch 'openflexure-stitching-from-pip' into 'v3'
Import openflexure-stitching from pip
See merge request openflexure/openflexure-microscope-server!270
|
2025-05-21 10:00:48 +00:00 |
|
jaknapper
|
44f2435ea4
|
Removed stitching path as kwarg for scanning
|
2025-05-21 10:30:42 +01:00 |
|
Julian Stirling
|
c793620fcd
|
Merge branch 'cleanup_empty_scans' into 'v3'
Added purge_empty_scans() method
Closes #370
See merge request openflexure/openflexure-microscope-server!257
|
2025-05-20 18:26:00 +00:00 |
|
Joe Knapper
|
6c8c8bf358
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-20 17:04:48 +00:00 |
|
jaknapper
|
4a44dceac6
|
More clear variable name, use _delete_scan to avoid calling fastapi-endpoint in loops
|
2025-05-20 16:36:57 +01:00 |
|
jaknapper
|
19d72bef1c
|
Error handling in _delete_scan(), which is now handled in GUI main.js
|
2025-05-14 16:11:02 +01:00 |
|
Joe Knapper
|
1468a90c60
|
Merge branch 'scan_tab' into 'v3'
Scan tab updates
See merge request openflexure/openflexure-microscope-server!260
|
2025-05-14 11:53:19 +00:00 |
|
jaknapper
|
99e52bcb2f
|
Formatting and fixing wrong variable in loop
|
2025-05-14 12:23:01 +01:00 |
|
Joe Knapper
|
251b0ca770
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-14 10:26:37 +00:00 |
|
jaknapper
|
3eea4bbaf6
|
Log each line individually to ensure line breaks
|
2025-05-13 17:08:09 +01:00 |
|
jaknapper
|
69260d1973
|
stitch available property, allowing GUI to only stitch when needed
|
2025-05-13 15:51:11 +01:00 |
|
jaknapper
|
a77c0f6f9d
|
Updated wrong path to file
|
2025-05-13 15:28:16 +01:00 |
|
Joe Knapper
|
b5893bc29c
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-13 12:34:50 +00:00 |
|
jaknapper
|
56edddd195
|
Data filename as global
|
2025-05-13 13:03:34 +01:00 |
|
jaknapper
|
1952e05284
|
Scan result in data json
|
2025-05-13 13:00:04 +01:00 |
|
jaknapper
|
9734bba23b
|
Inputs renamed to data where appropriate
|
2025-05-13 12:45:55 +01:00 |
|
jaknapper
|
0e3c71b958
|
Removed from finally block
|
2025-05-13 12:39:04 +01:00 |
|