rahix/openflexure-microscope-server
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions
4002 commits 1 branch 0 tags 24 MiB
Commit graph

789 commits

Author SHA1 Message Date
Julian Stirling
33413a591a Complete UI for arbitrary dectector settings. Required better method for invoking actions. 
Error handling was fixed in the process of getting the above correct.
 2025-07-31 20:56:55 +01:00
Julian Stirling
92d15d921b Display background detector settings built automatically from schema 2025-07-31 20:56:55 +01:00
Julian Stirling
e7e3a08210 Camera settings exposed in UI defined by server. 2025-07-31 20:56:55 +01:00
Julian Stirling
3651013440 Generalise server specified action buttons. 2025-07-31 20:56:55 +01:00
Julian Stirling
0794d4777f Camera calibration buttons specified by server. Simulation has option to remove sample 2025-07-31 20:56:55 +01:00
Joe Knapper
c00c027ab1 Apply suggestions from code review of branch img-name 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-07-31 14:52:21 +00:00
jaknapper
df918bf286 Prepend images with img_ 2025-07-31 13:53:57 +01:00
Julian Stirling
931a570b43 Merge branch 'purge-recentre' into 'v3' 
Remove auto-recentre stage

Closes #486

See merge request openflexure/openflexure-microscope-server!339
 2025-07-30 09:05:10 +00:00
jaknapper
10a49db9c9 Remove autorecentre 2025-07-29 18:29:15 +01:00
Julian Stirling
38f4a745c3 Fix bug with setting exposure time on load, add associated test 2025-07-29 14:05:12 +01:00
Julian Stirling
b90b02cf7d Better fix for exposure drift with more complete testing. Also fix return value for capture_to_memory 2025-07-29 12:11:45 +01:00
Julian Stirling
376780ea28 Stop exposure walking on camera reload, reset CCM on full calibration 2025-07-28 14:43:48 +01:00
Julian Stirling
547704fdc0 Merge branch 'bg_detect_in_camera' into 'v3' 
Refactor background detect to allow switching algorithms

See merge request openflexure/openflexure-microscope-server!327
 2025-07-28 09:21:43 +00:00
Julian Stirling
c17d7af1ab Apply suggestions from code review of branch bg_detect_in_camera 2025-07-27 19:26:05 +00:00
Julian Stirling
8e133a978d Clean up LUV background detect calculation 2025-07-27 10:32:33 +01:00
Julian Stirling
238d022342 Apply suggestions from code review of branch bg_detect_in_camera 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-07-26 16:45:06 +01:00
Joe Knapper
b4eaf48785 Merge branch 'Stitch-all' into 'v3' 
Stitch all scans button, and refresh scan tab when closing modals

See merge request openflexure/openflexure-microscope-server!330
 2025-07-25 17:20:03 +00:00
Joe Knapper
d6f1502593 Apply suggestions from code review of branch Stitch-all 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-07-25 16:42:27 +00:00
jaknapper
7ac77c3e89 Stitch all scans button, and refresh scan tab when closing modals 2025-07-25 16:52:37 +01:00
Julian Stirling
cc05ab4b5f Finish basic tests of background detect 2025-07-25 11:55:20 +01:00
Julian Stirling
d0b5db21ba Start adding background detect tests 2025-07-25 11:52:02 +01:00
Julian Stirling
ab6ccd429a Fix DataSchema return for background detector status 2025-07-24 18:37:34 +01:00
Julian Stirling
75bdae5593 Fix message formatting and dosctring syntax 2025-07-24 17:54:58 +01:00
Julian Stirling
25d2f400b1 Set background on the pi-camera during initial calibration 2025-07-24 17:15:28 +01:00
Julian Stirling
eed3c44804 Get new background detect running in simulation mode. 2025-07-24 17:08:39 +01:00
Julian Stirling
fe1b84a922 Complete first pass (untested on hardware) of bg detect refactor. 2025-07-24 17:07:50 +01:00
Julian Stirling
2245d9357d Continue to rebase background detect. 2025-07-24 17:07:50 +01:00
Julian Stirling
b5586a4b32 A partial refactor of background detect 2025-07-24 17:07:50 +01:00
Julian Stirling
31e3d15890 Add random noise to simulation image 2025-07-24 16:17:52 +01:00
Julian Stirling
5701225158 Update simulation canvas to have colour so it works with background detect. 2025-07-24 15:58:32 +01:00
Julian Stirling
c8e87577cb Add tests for new system Thing. 2025-07-15 00:14:07 +01:00
Julian Stirling
e3146f1798 Apply suggestions from code review of branch merge-settings-and-system-control 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-07-14 21:32:17 +00:00
Julian Stirling
9369b2988d Shutdown button terminates server in simulation. Adjust power tab layout 2025-07-14 18:57:36 +01:00
Julian Stirling
be94df7c8a Merge SettingsManager and SystemControl Things. 2025-07-14 17:59:46 +01:00
Julian Stirling
bed59c051b Merge branch 'update-setting-manager' into 'v3' 
Update setting manager

Closes #477, #343, and #475

See merge request openflexure/openflexure-microscope-server!321
 2025-07-14 16:47:41 +00:00
Julian Stirling
c9c8a89236 Merge branch 'simplify-csm-interface' into 'v3' 
Add camera-stage-mapping compliant functions to BaseStage and BaseCamera.

Closes #346 and #476

See merge request openflexure/openflexure-microscope-server!326
 2025-07-14 16:36:04 +00:00
Julian Stirling
34f8f86ef2 Apply suggestions from code review of branch update-setting-manager 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-07-14 17:11:54 +01:00
Julian Stirling
5c1f8f2e89 Write tests for checking git hash 2025-07-14 17:11:53 +01:00
Julian Stirling
608c4bd16f Expose version as thing property and via thing state so it ends up in metadata. 2025-07-14 17:11:53 +01:00
Julian Stirling
1dd0db888d Starting to create version reading code 2025-07-14 17:11:53 +01:00
Julian Stirling
d19d44ba4f Remove unused complex functionality from settings_manager.py. 2025-07-14 17:11:53 +01:00
Julian Stirling
59a5246904 Apply suggestions from code review of branch simplify-csm-interface 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2025-07-14 15:33:50 +00:00
Julian Stirling
705cf73173 Fixing docstrings for camera stage mapping changes. 2025-07-13 23:53:44 +01:00
Julian Stirling
531e5c27b2 Replace LoggingMoveWrapper with RecordedMove accepts a stage rather than an arbitrary move function 
This was needed to get the correct key word arguments
 2025-07-13 23:34:55 +01:00
Julian Stirling
b89449be77 Add camera-stage-mapping compliant functions to BaseStage and BaseCamera. 2025-07-13 21:55:55 +01:00
Julian Stirling
fab5fdfca2 Improve log filtering and logging error handling. Adding more logging tests. 2025-07-13 15:17:11 +01:00
Julian Stirling
ea73e44b01 Start adding tests for the loging configuration. 2025-07-13 14:28:55 +01:00
Julian Stirling
c68f0515f5 Apply suggestions from code review of branch better-docstrings 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-07-11 07:26:26 +00:00
Julian Stirling
f91582c9eb Apply suggestions from code review of branch better-docstrings 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-07-10 23:31:34 +00:00
Julian Stirling
7e6017f648 Get codespell passing and add it as a CI job. 2025-07-11 00:16:25 +01:00