jaknapper
26163dc97e
Added a new way to capture full res JPEGs, need to do a comparison of results
2025-06-23 11:17:45 +01:00
jaknapper
ab33de7ccd
Capture a jpeg to disk
2025-06-23 11:17:45 +01:00
jaknapper
d8878e40da
Stacking in autofocus with temp capture Thing
2025-06-23 11:17:45 +01:00
jaknapper
46458ca8a1
Create a stack folder and copy the middle image to image_dir
2025-06-23 11:17:45 +01:00
jaknapper
a1784941fe
Ruff formatting and removing all capturing from smart_scan
2025-06-23 11:17:45 +01:00
jaknapper
603b9c7d16
Functional z stack Thing
2025-06-23 11:17:45 +01:00
Julian Stirling
c70b487a1f
Automatically create HTML coverage report each time PyTest runs
2025-06-23 11:00:10 +01:00
Joe Knapper
4c72098536
Merge branch 'shutdown-timeout' into 'v3'
...
Add a timeout when shutting down the server.
See merge request openflexure/openflexure-microscope-server!297
2025-06-20 16:35:37 +00:00
Joe Knapper
cc506b8794
Merge branch 'simulation-axes' into 'v3'
...
Git ignore openflexure/ dir
See merge request openflexure/openflexure-microscope-server!298
2025-06-20 16:32:37 +00:00
Joe Knapper
9dac080566
Fixed merge conflict
2025-06-20 15:14:35 +00:00
Joe Knapper
b05e3bee63
added openflexure/ to .gitignore
2025-06-20 16:11:07 +01:00
jaknapper
f6cc7403e3
Update test_smart_spiral_first_few_pos() as smart stack chooses a different z_estimate
2025-06-20 15:01:09 +01:00
jaknapper
a001da0bcb
Restore closest_focus_site function
2025-06-20 15:01:09 +01:00
Joe Knapper
d1ed7ec797
Apply suggestions from code review of branch fast-stack
2025-06-20 11:26:58 +00:00
Joe Knapper
006d3b2a7b
Apply suggestions from code review of branch fast-stack
...
Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-06-20 11:23:14 +00:00
jaknapper
ce33b94aab
Capture as a Raw dependency to use methods that aren't actions
2025-06-20 12:19:07 +01:00
Julian Stirling
cdf23bc403
Add a timeout when shutting down the server.
...
The browser needs to be closed for graceful shutdown. If the browser
is left open the microscope may never shut down as it is waiting on
the uvicorn process to finish. This causes potential SD card issues.
This forces the server to force shutdown if it doesn't exit gracefully in
2 seconds.
2025-06-19 16:25:43 -04:00
jaknapper
6cf2f4d8c3
Typehints and docstrings in z_stack
2025-06-19 14:58:16 +01:00
jaknapper
00321d761d
Update docstring for nearby focus site
2025-06-19 14:57:27 +01:00
jaknapper
6acfbaefd6
Split up z stack function
2025-06-18 18:36:21 +01:00
jaknapper
c0677858a1
Scan planner finds lowest neighbour, not most recent
2025-06-18 15:40:21 +01:00
Joe Knapper
b01032be99
Merge branch 'update-issue-templates' into 'v3'
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Update issue templates
See merge request openflexure/openflexure-microscope-server!295
2025-06-17 16:23:43 +00:00
Julian Stirling
dd24a3863d
Apply suggestions from code review of branch update-issue-templates
...
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2025-06-17 15:58:45 +00:00
Julian Stirling
f7545c6d8d
Update issue templates
2025-06-17 11:18:33 -04:00
jaknapper
1d4bb7363f
Images to test control in GUI
2025-06-17 14:34:42 +01:00
jaknapper
e8c4103bb0
Remove unneeded logging
2025-06-17 14:34:42 +01:00
jaknapper
f363ec0eff
Docstring for test_stack
2025-06-17 14:34:42 +01:00
jaknapper
dbb65d55b5
Use scan autofocus dz
2025-06-17 14:34:42 +01:00
jaknapper
cdd603d751
Capture the full stack requested
2025-06-17 14:34:42 +01:00
jaknapper
0671f2d1be
Backlash correction as global, more comments
2025-06-17 14:34:42 +01:00
jaknapper
712f524414
Looping autofocus on failed smart stack
2025-06-17 14:34:42 +01:00
jaknapper
3e164102f6
A stack that tests whether the sharpest image is towards the middle
2025-06-17 14:34:42 +01:00
Julian Stirling
67e8b19603
Merge branch 'remove-nav-spinners-firefox' into 'v3'
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Remove numerical input spinners for x,y,z settings in Firefox
See merge request openflexure/openflexure-microscope-server!288
2025-06-16 12:15:42 +00:00
Julian Stirling
c43b7cb8b4
Merge branch 'more-checkers' into 'v3'
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Enable more lint checkers
See merge request openflexure/openflexure-microscope-server!290
2025-06-12 11:56:29 +00:00
Julian Stirling
37bb9635ad
Apply 2 suggestion(s) to 2 file(s)
...
Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-06-12 10:29:54 +00:00
Julian Stirling
3019e13c80
Add commented out code check to linters
2025-06-11 23:40:49 +01:00
Julian Stirling
86dad84a5a
Merge branch 'correct-alpha-version-changelog' into 'v3'
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Correct version name in change beta1 -> alpha1
See merge request openflexure/openflexure-microscope-server!291
2025-06-11 12:50:12 +00:00
Julian Stirling
fe26a299d5
Correct version name in change beta1 -> alpha1
2025-06-11 10:08:16 +00:00
Julian Stirling
04832892cc
Chnge docstring tester from Doc to D as Doc has no effect
2025-06-10 16:07:49 +01:00
Julian Stirling
1c54d25212
Add ruff checking for unnecessary comprehensions
2025-06-10 16:07:49 +01:00
Julian Stirling
2050c2dc7c
Add return checker, needed 4 fixes
2025-06-10 16:07:48 +01:00
Julian Stirling
3f0564f253
Turning on more lint checkers, warning for cameras that ignore resolution setting
2025-06-10 16:07:48 +01:00
Julian Stirling
cf80120572
Remove numerical input spinners for x,y,z settings in Firefox
...
Chrome/Safari/Edge etc are all set already by the
`.numeric-setting-line-input::-webkit-outer-spin-button`
and
`.numeric-setting-line-input::-webkit-inner-spin-button`
but firefox needs a different line set on the input itself see:
https://www.w3schools.com/howto/howto_css_hide_arrow_number.asp
2025-06-10 08:47:23 +01:00
Julian Stirling
6c6356bf38
Merge branch 'final-changes-for-v3.0.0-alpha1' into 'v3'
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Update depedencies and changelog prior to v3.0.0-alpha1 release
Closes #398
See merge request openflexure/openflexure-microscope-server!287
2025-06-09 15:38:56 +00:00
Julian Stirling
e223405444
Tweak changelog and add MR list
...
Co-authored-by: Beth Probert <beth_probert@outlook.com>
Co-authored-by: William Wadsworth <w.j.wadsworth@bath.ac.uk>
2025-06-09 16:11:19 +01:00
Julian Stirling
0457978048
Update depedencies and changelog priort to v3.0.0-alpha1 release
...
Closes #398
2025-06-09 15:39:26 +01:00
Joe Knapper
ae2ec1864f
Merge branch 'config-scan-dir' into 'v3'
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Add scan directory to json config
Closes #393
See merge request openflexure/openflexure-microscope-server!283
2025-06-09 13:42:27 +00:00
Julian Stirling
80b6fd088d
Merge branch 'reverse_csm_order' into 'v3'
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Swapped the order of CSM so y axis is completed first
See merge request openflexure/openflexure-microscope-server!285
2025-06-09 13:39:06 +00:00
Chish36
7eed48ed26
Swapped the order of CSM so y axis is completed first
2025-06-09 13:39:06 +00:00
Julian Stirling
37960a4cc2
Merge branch 'Server-versioning' into 'v3'
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Use same version number for server and webapp, add CI check
Closes #382
See merge request openflexure/openflexure-microscope-server!286
2025-06-09 12:32:41 +00:00
