rahix/openflexure-microscope-server
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329 commits

Author SHA1 Message Date
Joe Knapper
97c114b77e Show scan folder instead of name 2024-02-21 15:47:42 +00:00
Joe Knapper
61d7712c27 tiff as an option 2024-02-09 19:05:20 +00:00
Joe Knapper
6aa712e515 Rescaling stitch preview to avoid scrolling in y 2024-02-09 16:08:21 +00:00
Joe Knapper
81d6514eb0 Always show scan name during scan 2024-01-23 11:42:03 +00:00
Richard Bowman
6a47835ea1 Re-label check coverage button 2024-01-17 14:13:12 +00:00
Richard Bowman
1b39f9d5c0 Add a button to stitch scans 2024-01-17 13:46:29 +00:00
Richard Bowman
653e1a4159 Added a button to flash the LED 2024-01-17 13:36:26 +00:00
Richard Bowman
50cf8e6f78 Generate zip files before download 
Previously, zip files were only downloaded if they already
existed. Now, they are created with  an action, then
downloaded from the result.

Chrome now insists on downloading the files as `output.zip`, I can't see why this has changed, but perhaps it's related
to the security warning. This seems to be specific to zip files.
 2024-01-17 13:16:41 +00:00
Richard Bowman
674704b0d6 Display the microscope's hostname in the interface 2024-01-17 11:55:03 +00:00
Richard Bowman
6e18a91d1f Hide background detect settings in an accordion 
Feedback from clinicians is that this tab was too busy. This commit hides all but the two essential buttons.
 2024-01-17 11:28:36 +00:00
Richard Bowman
011dc2191c Add a control to set whether scans are automatically stitched. 2024-01-15 21:36:15 +00:00
Richard Bowman
7d63c9da44 Add a button to save settings to disk 2024-01-15 21:19:03 +00:00
Joe Knapper
e483c3ddfb custom scan name from gui 2024-01-15 17:40:17 +00:00
Richard Bowman
20efaa2799 Appearance tweaks 
actionLogDisplay had white-on-white text in dark mode: I've fixed color to be black now.

added a title for the mini stream display during scans
 2024-01-11 14:08:32 +00:00
Richard Bowman
6b6946ec60 Cope with an empty scan list 2024-01-11 13:37:57 +00:00
Richard Bowman
f26230efb6 Swap background detect from argument to property 
I've added boolean support to PropertyControl. This required
working around a bug in axios, that ignored `false` when sent
as the body of a request.
 2024-01-11 03:01:33 +00:00
Richard Bowman
3de7aa2fb2 Don't invoke stitching from the front-end 
Stitching is now done automatically in a sub process by the
server. This is much cleaner - and all we need to do is poll for
file updates.

I've also styled the log display slightly better.
 2024-01-11 01:51:17 +00:00
Richard Bowman
6b466c80a9 Add polling for preview stitched images 2024-01-11 01:50:01 +00:00
Richard Bowman
215bfb5121 Leave scan log open until closed 
The log/progress view is now closed explicitly, rather than disappearing as soon as the scan is over.
 2024-01-10 20:46:06 +00:00
Richard Bowman
81540ebc45 Linter fixes 2024-01-10 20:46:06 +00:00
Richard Bowman
46444770f3 Improved styling and synchronisation 2024-01-10 20:46:06 +00:00
Richard Bowman
53644a691b Refactored taskSubmitter to enable bits to be re-used 2024-01-10 20:46:06 +00:00
jaknpper
d219e32bc8 Option to run scan without background detect in webapp and Thing 2024-01-09 20:24:51 +00:00
Joe Knapper
89dae7ba80 Button for not-smart scan and better positioned navigate buttons 2024-01-09 16:46:13 +00:00
Joe Knapper
090f447d26 Thing properties for autofocus dz, overlap and range limit 2024-01-08 19:33:24 +00:00
Richard Bowman
7eeee89b23 Error messages if background detect fails. 2024-01-08 16:40:07 +00:00
Richard Bowman
c0d25b194c Format fixes/disable warnings 
My v-html use is OK as the  HTML is sanitized.
 2024-01-08 16:24:43 +00:00
Richard Bowman
4f1035cbe6 Handle python "underlining" nicely 
Python stack traces use spaces and carets to "underline" the
code causing the problem. I've now matched and processed
these lines to add <u> tags.

This necessitated escaping messages and displaying raw HTML
which is now done by `escapeText`.
 2024-01-08 15:51:46 +00:00
Richard Bowman
4bf473fad7 Better handling of multiline logs 
I fixed a logic error related to the reversing of the list, and
now display multi-line log messages as a single summary line with a "more info" link to expand them.

Expanded log messages show without text wrap - this makes
Python exception traces easier to read.

For extra points, we could even do something cunning, like
process the ^^^ markers into <u>
 2024-01-08 15:30:51 +00:00
Richard Bowman
24060b6d2a Cope with multiline logs 2024-01-08 11:53:37 +00:00
Joe Knapper
cb916bb4a3 Image fraction and label as a thing property in webapp 2024-01-07 14:58:19 +00:00
Richard Bowman
858e99a47f Add a viewer for scans with delete and download buttons 2024-01-05 00:44:05 +00:00
Richard Bowman
7959b34c44 Deleted unused code from slideScan 2024-01-05 00:43:46 +00:00
Richard Bowman
a442709412 Linter fixes 2024-01-04 16:35:38 +00:00
Richard Bowman
7dd4c1f4c6 Add modal progress box for stage recentering 
I've also added a title to the modal box
 2024-01-04 15:54:56 +00:00
Richard Bowman
a18ac90c24 Allow camera stage mapping calibration to be cancelled 2024-01-04 14:49:27 +00:00
Richard Bowman
8e2402af18 Enable cancelling moves 
This enables the cancel button - it will be necessary to update `labthings-sangaboard` for this to work.
 2024-01-04 10:07:44 +00:00
Richard Bowman
c7f828e373 Add a button for smart scan 2024-01-04 02:08:39 +00:00
Richard Bowman
44a7a8c1ab Tidy up background detect pane 2024-01-04 00:33:39 +00:00
Richard Bowman
40580327c6 Linter fixes 2024-01-03 21:53:14 +00:00
Richard Bowman
5ca8070bc8 WIP: modal progress dialog for TaskSubmitter 
Longer-running tasks would benefit hugely from showing the
operator a progress indicator. This branch will add a basic
log display allowing messages to be shown to the user.
This branch may also add an abort button to the above dialog.
 2024-01-03 21:40:12 +00:00
Richard Bowman
778da73a70 Web app controls for background detection 
There are now buttons to set, and check, the background
detect plugin.
 2024-01-03 21:36:25 +00:00
Richard Bowman
0083231b85 Switch to matierial-symbols 
material-design-icons was outdated and missing symbols. I've now switched, as recommended in the issue.

/closes #254
 2024-01-03 20:51:32 +00:00
Richard Bowman
656e902198 Add a button to recentre the stage. 2024-01-03 17:15:29 +00:00
Richard Bowman
37f6251d41 Eliminate references to old extensions API 
Some of these will, in the future, be replaced by the new
API but, for now, the features in question are disabled anyway.
 2024-01-03 14:28:31 +00:00
Richard Bowman
b23d6043c5 Remove IHI slidescan from features settings 2023-12-15 01:22:21 +00:00
Richard Bowman
c8906008ed Update zero coordinates button 
This now uses a taskSubmitter and the new URL
 2023-12-15 00:32:37 +00:00
Richard Bowman
93757c2103 Improve responsiveness and reliability of moves 
Fixed a bug where incorrect values in the position control
caused incorrect relative moves.

Decreased the polling interval to make moves more responsive.
 2023-12-15 00:15:23 +00:00
Richard Bowman
a9fdb6fd52 Update position controls to resemble propertyControl 
I've simplified the HTML template and added a refresh button.
 2023-12-15 00:00:02 +00:00
Richard Bowman
30deedde9e Route all moves through the Move taskSubmitter 
I've consolidated move code (except moveinimagecoordinates)
so that it now all simulates clicking "submit" on the taskSubmitter.
 2023-12-14 23:38:16 +00:00