Joe Knapper
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1468a90c60
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Merge branch 'scan_tab' into 'v3'
Scan tab updates
See merge request openflexure/openflexure-microscope-server!260
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2025-05-14 11:53:19 +00:00 |
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jaknapper
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99e52bcb2f
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Formatting and fixing wrong variable in loop
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2025-05-14 12:23:01 +01:00 |
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Joe Knapper
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251b0ca770
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-14 10:26:37 +00:00 |
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jaknapper
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3eea4bbaf6
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Log each line individually to ensure line breaks
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2025-05-13 17:08:09 +01:00 |
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jaknapper
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69260d1973
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stitch available property, allowing GUI to only stitch when needed
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2025-05-13 15:51:11 +01:00 |
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jaknapper
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a77c0f6f9d
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Updated wrong path to file
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2025-05-13 15:28:16 +01:00 |
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Joe Knapper
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b5893bc29c
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-13 12:34:50 +00:00 |
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jaknapper
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56edddd195
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Data filename as global
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2025-05-13 13:03:34 +01:00 |
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jaknapper
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1952e05284
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Scan result in data json
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2025-05-13 13:00:04 +01:00 |
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jaknapper
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9734bba23b
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Inputs renamed to data where appropriate
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2025-05-13 12:45:55 +01:00 |
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jaknapper
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845c21c68a
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Move update data outside of finally block
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2025-05-13 11:46:56 +01:00 |
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jaknapper
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272f050905
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Move update data outside of finally block
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2025-05-13 11:32:03 +01:00 |
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jaknapper
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4234c92fed
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Better formatting of duration as datetime timedelta without microseconds
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2025-05-13 11:10:27 +01:00 |
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jaknapper
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3c93a56c74
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Updated json at end
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2025-05-12 18:53:05 +01:00 |
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Joe Knapper
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ecfa0aa479
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Merge branch 'scan_coments' into 'v3'
New comments on scanning
Closes #329
See merge request openflexure/openflexure-microscope-server!256
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2025-05-08 17:59:14 +00:00 |
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Joe Knapper
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cb71f32b95
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Apply 1 suggestion(s) to 1 file(s)
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2025-05-08 17:44:42 +00:00 |
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Joe Knapper
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973988219f
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-08 17:43:49 +00:00 |
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jaknapper
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7e507be4a1
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Ruff formatting
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2025-05-08 18:42:10 +01:00 |
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jaknapper
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0e34ab8793
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New comments on scanning
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2025-05-08 18:41:32 +01:00 |
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Joe Knapper
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444c056f93
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Apply 1 suggestion(s) to 1 file(s)
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2025-05-08 17:30:26 +00:00 |
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jaknapper
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d2ab448732
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New comments on scanning
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2025-05-08 18:22:40 +01:00 |
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jaknapper
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46865b342d
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Remove testing focus success, use scan data autofocus dz
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2025-05-08 17:32:38 +01:00 |
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jaknapper
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bdb307ca18
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Remove verify_autofocus from autofocus
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2025-05-08 17:32:04 +01:00 |
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jaknapper
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736b82d071
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Remove logger from zipping
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2025-05-07 20:35:26 +01:00 |
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Joe Knapper
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6f8e91afe7
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Apply 1 suggestion(s) to 1 file(s)
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2025-05-07 20:22:40 +01:00 |
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jaknapper
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b31a5e44fb
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Rename banned names to delayed
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2025-05-07 20:22:40 +01:00 |
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jaknapper
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a9d06f7d7e
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Remove commented out code, unused arguments and extra logging
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2025-05-07 20:22:39 +01:00 |
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jaknapper
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a88349dbfe
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Loop through all stitched images
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2025-05-07 20:22:39 +01:00 |
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jaknapper
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aa656e4a01
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Split out zip functions and copying stitched image
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2025-05-07 20:22:38 +01:00 |
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jaknapper
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2205459aeb
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Removed z_stack Thing from rebase
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2025-05-07 19:59:33 +01:00 |
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jaknapper
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673a135157
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Reorganise imports
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2025-05-07 19:52:21 +01:00 |
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jaknapper
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a4801ad861
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Update camera thing to match upstream
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2025-05-07 19:52:21 +01:00 |
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jaknapper
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6cf99d5096
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Stack settings in GUI
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2025-05-07 19:52:21 +01:00 |
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jaknapper
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f50580cdd0
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Give sharpness monitor a descriptive name, not m
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2025-05-07 19:52:20 +01:00 |
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jaknapper
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bf6437b42c
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Renaming z_stack features for clarity, docstring on AutofocusThing
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2025-05-07 19:52:20 +01:00 |
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jaknapper
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9f39f61d03
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Stacking in autofocus with temp capture Thing
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2025-05-07 19:52:18 +01:00 |
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jaknapper
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dee11deec1
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New capturing Thing
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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9b2ccea660
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Don't move further after the final image of the stack
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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ade713b6d0
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Create a stack folder and copy the middle image to image_dir
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2025-05-07 19:51:57 +01:00 |
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jaknapper
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0b7a817674
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Ruff formatting and removing all capturing from smart_scan
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2025-05-07 19:51:55 +01:00 |
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jaknapper
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1f3211e3ee
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Functional z stack Thing
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2025-05-07 19:49:52 +01:00 |
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Joe Knapper
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fe5db1a0f5
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Merge branch 'image_count' into 'v3'
Regex to count captured images
Closes #306
See merge request openflexure/openflexure-microscope-server!253
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2025-05-07 13:53:37 +00:00 |
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Joe Knapper
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88f72caed5
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Merge branch 'thumbnails-in-scan-tab' into 'v3'
Thumbnails and accurate durations in scan-list tab
See merge request openflexure/openflexure-microscope-server!250
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2025-05-07 13:53:34 +00:00 |
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jaknapper
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f5265b262e
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Regex as global
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2025-05-07 11:26:49 +01:00 |
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jaknapper
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30ff796833
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Regex to count captured images
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2025-05-07 11:09:29 +01:00 |
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Joe Knapper
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a1be3e518f
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Apply 2 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-01 14:14:34 +00:00 |
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jaknapper
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fbbb3decdc
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Ruff formatting
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2025-05-01 13:16:48 +00:00 |
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jaknapper
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b8ddab1ed8
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Remove correlation only stitching, now covered by preview stitch
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2025-05-01 13:16:48 +00:00 |
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jaknapper
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5ca4c824aa
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Remove producing thumbnail (to be added to stitching repo)
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2025-04-23 14:28:41 +01:00 |
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Julian Stirling
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3adc34c30b
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Merge branch 'dont-test-focus-change' into 'v3'
Remove focus_change_acceptable test
Closes #342
See merge request openflexure/openflexure-microscope-server!249
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2025-04-23 11:28:05 +00:00 |
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