Julian Stirling
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73e54b802b
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Stop smart stack infinietly looping
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2025-06-27 01:29:26 +01:00 |
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Julian Stirling
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43d5f2fdfe
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Change capture_resolution to save resolution, because it is used for saving not capture
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2025-06-26 19:00:52 +01:00 |
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Julian Stirling
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6a87805b47
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Fixing a number of issues from the merge and refactor.
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2025-06-26 18:29:12 +01:00 |
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Julian Stirling
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61dd5e4958
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Compete first (untested) pass of trying to make fast stack compatible with new memory captures
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2025-06-26 17:43:11 +01:00 |
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Julian Stirling
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fda0a6e1ab
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Merge branch 'v3' into fast-stack, with conflict resolution but not fully
working yet
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2025-06-26 11:50:24 +01:00 |
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Julian Stirling
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0933ece63a
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Apply suggestions from code review of branch jpeg-capture-in-stacking
Co-authored-by: Beth Probert <beth_probert@outlook.com>
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2025-06-25 15:39:36 +01:00 |
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jaknapper
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62a07622fa
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If not provided, find resize from image size when stitching
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2025-06-23 15:09:18 +01:00 |
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jaknapper
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8fea35a663
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Remove duplicate docstring
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2025-06-23 12:05:52 +01:00 |
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jaknapper
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4271c28045
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More descriptive variable names in smart_scan, use resize in stitching with no default
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2025-06-23 11:25:49 +01:00 |
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jaknapper
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985d20e032
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Capture resolution as a Thing property
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2025-06-23 11:25:49 +01:00 |
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jaknapper
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478c3629c9
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Scan_resize from global vars, added to scan_data
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2025-06-23 11:19:23 +01:00 |
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jaknapper
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d39bcbaf5c
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Moved streaming changing to inner loop
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2025-06-23 11:19:23 +01:00 |
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jaknapper
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dbed1c6971
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Default resize in stitching for scan tab stitching
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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9f2a131f1e
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Swap stream for scan, target_resolution as arg
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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f5c1ff2621
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Ruff formating
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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17f3bbe646
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Low res stream during scanning for instant high res captures
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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a9fdd0ea3e
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Wait params in captures, multiple attempts to capture
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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de7ffb9d1e
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Stream_name and capture_method args updated
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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132efa8033
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Options for capture method, default downsampling of correlations
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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ab33de7ccd
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Capture a jpeg to disk
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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d8878e40da
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Stacking in autofocus with temp capture Thing
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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603b9c7d16
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Functional z stack Thing
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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6acfbaefd6
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Split up z stack function
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2025-06-18 18:36:21 +01:00 |
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jaknapper
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e8c4103bb0
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Remove unneeded logging
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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dbb65d55b5
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Use scan autofocus dz
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2025-06-17 14:34:42 +01:00 |
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jaknapper
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3e164102f6
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A stack that tests whether the sharpest image is towards the middle
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2025-06-17 14:34:42 +01:00 |
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Julian Stirling
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b45f5651ab
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Add scan directory to json config
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2025-06-06 12:21:51 +01:00 |
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jaknapper
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a499d9230c
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Switch to updated "preview stitch" mode in stitching
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2025-05-23 16:28:22 +01:00 |
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jaknapper
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cc3620d2ed
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Stitch with dzi by default, and check for dzi available in scans()
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2025-05-23 16:28:21 +01:00 |
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Julian Stirling
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fe1696df28
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Fix error in purge_empty_scans if the images dir hadn't been created
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2025-05-23 12:49:46 +01:00 |
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Julian Stirling
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70f4304b2e
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Fix bug where .jpg files are not counted in scan list (only .jpeg)
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2025-05-23 11:45:26 +01:00 |
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Julian Stirling
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6332c8b647
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Merge branch 'openflexure-stitching-from-pip' into 'v3'
Import openflexure-stitching from pip
See merge request openflexure/openflexure-microscope-server!270
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2025-05-21 10:00:48 +00:00 |
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jaknapper
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44f2435ea4
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Removed stitching path as kwarg for scanning
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2025-05-21 10:30:42 +01:00 |
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Julian Stirling
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c793620fcd
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Merge branch 'cleanup_empty_scans' into 'v3'
Added purge_empty_scans() method
Closes #370
See merge request openflexure/openflexure-microscope-server!257
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2025-05-20 18:26:00 +00:00 |
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Joe Knapper
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6c8c8bf358
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-20 17:04:48 +00:00 |
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jaknapper
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4a44dceac6
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More clear variable name, use _delete_scan to avoid calling fastapi-endpoint in loops
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2025-05-20 16:36:57 +01:00 |
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jaknapper
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19d72bef1c
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Error handling in _delete_scan(), which is now handled in GUI main.js
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2025-05-14 16:11:02 +01:00 |
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Joe Knapper
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1468a90c60
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Merge branch 'scan_tab' into 'v3'
Scan tab updates
See merge request openflexure/openflexure-microscope-server!260
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2025-05-14 11:53:19 +00:00 |
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jaknapper
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99e52bcb2f
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Formatting and fixing wrong variable in loop
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2025-05-14 12:23:01 +01:00 |
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Joe Knapper
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251b0ca770
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-14 10:26:37 +00:00 |
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jaknapper
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3eea4bbaf6
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Log each line individually to ensure line breaks
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2025-05-13 17:08:09 +01:00 |
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jaknapper
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69260d1973
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stitch available property, allowing GUI to only stitch when needed
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2025-05-13 15:51:11 +01:00 |
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jaknapper
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a77c0f6f9d
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Updated wrong path to file
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2025-05-13 15:28:16 +01:00 |
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Joe Knapper
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b5893bc29c
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-13 12:34:50 +00:00 |
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jaknapper
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56edddd195
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Data filename as global
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2025-05-13 13:03:34 +01:00 |
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jaknapper
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1952e05284
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Scan result in data json
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2025-05-13 13:00:04 +01:00 |
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jaknapper
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9734bba23b
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Inputs renamed to data where appropriate
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2025-05-13 12:45:55 +01:00 |
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jaknapper
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0e3c71b958
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Removed from finally block
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2025-05-13 12:39:04 +01:00 |
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jaknapper
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3a45c68ef3
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Try Except around deleting scans to check for PermissionErrors
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2025-05-13 12:23:01 +01:00 |
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jaknapper
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845c21c68a
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Move update data outside of finally block
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2025-05-13 11:46:56 +01:00 |
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