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Author SHA1 Message Date
Beth Probert
538f8ffe09 Update bug template to include table or configuration, more detail about how often the bug happens, confirming that the user has checked this is a new bug, and the difference in expected and current behaviour. 2026-03-06 16:31:40 +00:00
Beth Probert
2395234322 Merge branch 'v3' into 523-improve-validation-checks 2026-03-06 16:11:19 +00:00
Julian Stirling
ba8de65fd2 Merge branch 'codespell-update' into 'v3' 
Fix spellings found as codespell updates

See merge request openflexure/openflexure-microscope-server!526
 2026-03-06 16:10:17 +00:00
Beth Probert
349485d43b Remove multi-underscores from allowed names 2026-03-06 15:52:50 +00:00
Beth Probert
2c2f97cb56 Force file names to be lower case to avoid Windows issues around case sensitivity when checking if a file already exists. Path names can be uppercase as these will be defined on a users system and pre-exist. Files are created by us so we can force sanitation 2026-03-06 15:37:01 +00:00
Julian Stirling
011fc5a795 Fix spellings found as codespell updates 2026-03-06 15:06:53 +00:00
Beth Probert
35f7adcf07 Codespell 2026-03-06 14:16:42 +00:00
Beth Probert
4395d4001c Allow relative imports with two dots at start of path. Update unit tests. 2026-03-06 14:13:00 +00:00
Beth Probert
e5429d6cda Change make_path_safe to allow single dot relative imports, but no dots anywhere else. Added new unit tests for this. 2026-03-06 14:07:07 +00:00
Beth Probert
713df248ff Add underscores to fix unit test 2026-03-06 09:53:41 +00:00
Julian Stirling
f7cb84bff5 Merge branch 'align-modal' into 'v3' 
Align buttons in confirmation modal

Closes #709

See merge request openflexure/openflexure-microscope-server!525
 2026-03-06 09:42:18 +00:00
Joe Knapper
76e80b299f Align buttons in confirmation modal 2026-03-05 16:36:10 +00:00
Beth Probert
7a17c92d3e Apply suggestions from code review of branch 523-improve-validation-checks 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-03-05 15:13:42 +00:00
Beth Probert
f52ce85b3e Ruff formatting 2026-03-05 14:04:33 +00:00
Beth Probert
35efba19b8 Use pytest parametrize for better coverage of forbidden commands and reserved names 2026-03-05 13:55:05 +00:00
Beth Probert
fa9ea77812 Ruff check 2026-03-05 13:42:55 +00:00
Beth Probert
48f6e1b369 Allow python and python3 as stitching commands. They are allowed. Move stitching tests into one file 2026-03-05 13:35:21 +00:00
Beth Probert
98e71207c5 Add forbidden windows commands to stitching and utilities to check for file name sanitation. Unit tests also added 2026-03-05 13:03:17 +00:00
Beth Probert
cea1a7a748 Ruff fix 2026-03-05 11:40:25 +00:00
Joe Knapper
a988b726f5 Merge branch 'lower-target-brightness' into 'v3' 
Decrease target brightness for both cameras as its pre-gamma

Closes #621

See merge request openflexure/openflexure-microscope-server!491
 2026-03-05 10:59:07 +00:00
Beth Probert
417da8d1d7 Ruff fix 2026-03-05 10:50:24 +00:00
Beth Probert
b9e9e29210 Moving debug to customise_server 2026-03-05 10:38:10 +00:00
Beth Probert
c3ad127f1c Merge branch 'v3' into labthings-debug-logging-config 2026-03-05 10:27:05 +00:00
Julian Stirling
5fab6825e2 Update picamera tests 2026-03-04 22:47:01 +00:00
Joe Knapper
84f3032022 Update docstrings to explain lower brightness 2026-03-04 20:52:49 +00:00
jaknapper
e324014a81 Increase target exposure to 40% 2026-03-04 20:52:49 +00:00
Joe Knapper
75ca73f148 Decrease target brightness for both cameras as its pre-gamma 2026-03-04 20:52:49 +00:00
Julian Stirling
8dc7d1cb56 Merge branch 'data-directory' into 'v3' 
Create and mount application level data directory rather than just a scan directory

Closes #595 and #697

See merge request openflexure/openflexure-microscope-server!503
 2026-03-04 20:10:06 +00:00
Beth Probert
6a8e1198d9 Add unit test for debug cli arg 2026-03-04 18:16:22 +00:00
Beth Probert
7c6397083c Add comment 2026-03-04 18:11:57 +00:00
Beth Probert
1a13cbe592 Add labthings debug config when spinning up a server 2026-03-04 17:49:48 +00:00
Julian Stirling
a7a61971d3 Update picamera tests 2026-03-04 17:27:59 +00:00
Julian Stirling
3a9340f6e0 Update scan directory in webapp 2026-03-04 17:22:03 +00:00
Julian Stirling
ec27b7d5c5 Update integration tests for application_config 2026-03-04 17:22:03 +00:00
Julian Stirling
7e4ec53d78 Update how the application configuration is read for LabThings 0.0.17 2026-03-04 17:22:03 +00:00
Julian Stirling
45903f92a6 Create and mount application level data direcory rather than just a scan directory 2026-03-04 17:22:03 +00:00
Julian Stirling
2c2a52cb97 Merge branch 'metadata-testing' into 'v3' 
Metadata testing

Closes #576 and #575

See merge request openflexure/openflexure-microscope-server!519
 2026-03-04 17:19:02 +00:00
jaknapper
7ca94497c7 Remove link from basecamera docstring 2026-03-03 15:32:59 +00:00
jaknapper
9a6f80edf4 Update camera_test with extra key 2026-03-03 14:45:32 +00:00
jaknapper
3020ab59f4 Fix typing for gamma_curve 2026-03-03 14:21:28 +00:00
jaknapper
b716013ef2 Fixed tuning file gamma key to gamma_curve 2026-03-03 14:03:17 +00:00
jaknapper
0173cf912f Add gamma_curve to metadata 2026-03-03 13:59:43 +00:00
jaknapper
17f77e36c4 Picamera test 2026-03-03 13:33:34 +00:00
Joe Knapper
5019884175 Camera metadata includes subclass name, and test 2026-03-03 13:23:30 +00:00
Julian Stirling
ac9852a7ad Merge branch 'less-stack-coersion' into 'v3' 
Do less coersion for stacks now labthings validates settings.

See merge request openflexure/openflexure-microscope-server!516
 2026-03-03 10:02:05 +00:00
Julian Stirling
0fdcb9b623 Merge branch 'equal-offsets' into 'v3' 
Allow histo scans with equal dx and dy

See merge request openflexure/openflexure-microscope-server!517
 2026-03-02 22:56:53 +00:00
Julian Stirling
1dce732a9a Always log dx and dy steps for Histoscan 2026-03-02 20:53:16 +00:00
Joe Knapper
c09164a4e3 Apply suggestions from code review of branch equal-offsets 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2026-03-02 20:47:12 +00:00
Joe Knapper
7d3427ad2a Test equal overlaps 2026-03-02 19:31:04 +00:00
Joe Knapper
5a79e4ffd3 Allow histo scans with equal dx and dy 2026-03-02 19:24:20 +00:00